# Mixture fMRI Clustering Analysis

## Documentation for package ‘MixfMRI’ version 0.1-4

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Code demos. Use demo() to run them.
- Package README

## Help Pages

MixfMRI-package | fMRI Clustering Analysis
.FC.CT | Sets of controls in MixfMRI
apecma.step.gbd | Main algorithms implemented in fclust
cba.cor | Generalized Cluster-Based Analysis (CBA) Method
cba.cor.2d | Generalized Cluster-Based Analysis (CBA) Method
cba.cor.3d | Generalized Cluster-Based Analysis (CBA) Method
cluster.threshold | Cluster threshold an array.
cluster_mass | Cluster threshold an array.
cov.logit.ETA | Covariance Matrices of Logit ETA
cov.logit.z | Covariance Matrices
cov.param | Covariance Matrices
cov.post.z | Covariance Matrices
dmixpval | Density function of p-values
dpval | Density function of p-values
EC.3D | Expected Euler Characteristic for a 3D Random Field
ecm.step.gbd | Main algorithms implemented in fclust
em.step.gbd | Main algorithms implemented in fclust
fclust | Main MixfMRI function
fdr.bh.p1 | False Discovery Rates for Spatial Signals using Benjamini and Heller (2007)
fdr.bh.p2 | False Discovery Rates for Spatial Signals using Benjamini and Heller (2007)
gcv.smooth2d | Generate datasets with smoothing for MixfMRI simulations
gendataset | Generate datasets for MixfMRI simulations
initial.em.gbd | Main initialization functions
initial.RndEM.gbd | Main initialization functions
lmt.I | Likelihood Mixture Tests with Identity Cov Matrix or Only p-values
lmt.pv | Likelihood Mixture Tests with Identity Cov Matrix or Only p-values
logor.stat | Compute Statistics for Log Odds Ratio of Posterior Probability
lrt | Likelihood ratio tests
lrt.betaab | Likelihood ratio tests
lrt.betamean | Likelihood ratio tests
lrt2 | Likelihood ratio tests
MixfMRI | fMRI Clustering Analysis
PARAM | Main MixfMRI function
PARAM.org | Main MixfMRI function
plotfclust | Main plotting function
plotfclustpv | Main plotting function
plotpv | Main plotting function
plotpvlegend | Main plotting function
post.prob | Covariance Matrices
print.fclust | Print fclust related outputs
pstats | Example datasets in MixfMRI
pval.2d.complex | Example datasets in MixfMRI
pval.2d.mag | Example datasets in MixfMRI
qvalue | Q-values using Benjamini and Hochberg (1995)
set.global | Main MixfMRI function
shepp0fMRI | Example datasets in MixfMRI
shepp1fMRI | Example datasets in MixfMRI
shepp2fMRI | Example datasets in MixfMRI
sheppAnat | Example datasets in MixfMRI
summarized.overlap | Summarized Overlap
Threshold.Bonferroni | Calculates Bonferroni Threshold
Threshold.FDR | False Discovery Rate (FDR) Threshold
Threshold.RF | Random Field Theory Thersholds.
toy1 | Example datasets in MixfMRI
toy2 | Example datasets in MixfMRI