'C++' Implementations of Functional Enrichment Analysis

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Documentation for package ‘enrichit’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

compareClusterResult-class	Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis.
enrichit_params	Common parameters for enrichit functions
enrichResult-class	Class "enrichResult" This class represents the result of enrichment analysis.
EXTID2NAME	EXTID2NAME
geneID	geneID generic
geneInCategory	geneInCategory generic
gsea	Gene Set Enrichment Analysis (GSEA)
gseahResult-class	Class "gseaResult" This class represents the result of GSEA analysis
gseaResult-class	Class "gseaResult" This class represents the result of GSEA analysis
gseaScores	Calculate GSEA Running Enrichment Scores
gsea_gson	gsea_gson
gsfilter	gsfilter
ora	Over-Representation Analysis (ORA)
ora_gson	ora-gson
plot-method	Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis.
setReadable	setReadable
show	show method
show-method	Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis.
show-method	Class "enrichResult" This class represents the result of enrichment analysis.
show-method	Class "gseaResult" This class represents the result of GSEA analysis
summary	summary method
summary-method	Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis.
summary-method	Class "enrichResult" This class represents the result of enrichment analysis.
summary-method	Class "gseaResult" This class represents the result of GSEA analysis