Non-Additive Expression Analysis of Hybrid Offspring

Documentation for package ‘ExpGenetic’ version 0.1.0

basepreplot	Plot the base frequency distribution diagram for small RNA (sRNA)
Countfilter	Filtering out lowly expressed genes based on count
F1_miRNA_count	Count table of miRNAs in F1 (F1: the polyploid progeny).
F1_miRNA_rpm	RPM table of miRNAs in F1 (F1: the polyploid progeny).
F1_sRNA_seq	All sRNA sequences in F1 (F1: the polyploid progeny).
Get12Bins	Non-additive expression analysis
GetDAtable	Non-additive expression analysis
GetDEdata	Get the results of differential expression analysis.
lenplot	Plot the length distribution diagram for small RNAs (sRNAs)
mirnapredata	Base frequency distribution of small RNA (sRNA)
P1_miRNA_count	Count table of miRNAs in P1 (P1: one of the parents).
P1_miRNA_rpm	RPM table of miRNAs in P1 (P1: one of the parents).
P1_sRNA_seq	All sRNA sequences in P1 (P1: one of the parents).
P2_miRNA_count	Count table of miRNAs in P2 (P2: one of the parents).
P2_miRNA_rpm	RPM table of miRNAs in P2 (P2: one of the parents).
P2_sRNA_seq	All sRNA sequences in P2 (P2: one of the parents).
polyDESeq	Make a Triangle Diagram
Rpmfilter	Filtering out lowly expressed genes based on RPM
srnapredata	Length distribution of small RNAs (sRNAs)
VennData	Get the details of the Venn Diagram
VennPlot	Make a three-set Venn Diagram