Import, Process, Analyse, and Calculate Rates from Respirometry Data

[Up] [Top]

Documentation for package ‘respR’ version 2.2.0

Help Pages

adjust_rate Adjust rates to account for background respiration or oxygen flux.
adjust_rate.ft Adjust rates in flowthrough respirometry to account for background respiration or oxygen flux.
algae.rd Oxygen production respirometry data
auto_rate Automatically determine most linear, highest, lowest and rolling oxygen uptake or production rates
auto_rate.int Run auto_rate on multiple replicates in intermittent-flow respirometry data
background_con.rd Background respirometry data (constant)
background_exp.rd Background respirometry data (exponential)
background_lin.rd Background respirometry data (linear)
calc_rate Calculate rate of change in oxygen over time
calc_rate.bg Calculate background oxygen uptake or input rates
calc_rate.ft Calculate rate of change in oxygen from flowthrough respirometry data
calc_rate.int Extract rates from multiple replicates in intermittent-flow respirometry data
convert_DO Convert between units of dissolved oxygen
convert_rate Convert a unitless oxygen rate value to absolute, mass-specific or area-specific rate
convert_rate.ft Convert a unitless oxygen rate value from flowthrough respirometry to absolute, mass-specific or area-specific rates
convert_val Convert values of temperature, volume, mass, area, and atmospheric pressure to different units
flowthrough.rd Flowthrough respirometry data on the chiton, _Mopalia lignosa_
flowthrough_mult.rd Multi-column flowthrough respirometry data
flowthrough_sim.rd Flowthrough respirometry data with increasing background rate
format_time Parse date-time data to numeric time for use in respR functions
import_file Import respirometry system raw data files
inspect Explore and visualise respirometry data and check for common errors
inspect.ft Explore and visualise flowthrough respirometry data and check for errors
intermittent.rd Respirometry data of the sea urchin, _Heliocidaris Erythrogramma_
oxy_crit Calculate critical oxygen values, such as PCrit
sardine.rd Respirometry data of the sardine, _Sardinops sagax_
select_rate Select rate results based on a range of criteria
select_rate.ft Select rate results based on a range of criteria
squid.rd Respirometry data of the squid, _Doryteuthis opalescens_
subsample Subsample a data frame object
subset_data Subset a 'data.frame', 'inspect', or 'inspect.ft' object
unit_args Print examples of unit inputs for use in convert_DO, convert_rate, and convert_rate.ft
urchins.rd Multi-column respirometry data of the sea urchin, _Heliocidaris Erythrogramma_, including background respiration
zeb_intermittent.rd Respirometry data of a zebrafish, _Danio rerio_