| alwaysLumpable | Mutation model properties |
| isLumpable | Mutation model properties |
| isReversible | Mutation model properties |
| isStationary | Mutation model properties |
| lumpedMatrix | Combine alleles in a mutation matrix |
| model_properties | Mutation model properties |
| mutationMatrix | Mutation matrix |
| mutationModel | Mutation models |
| pedmut | pedmut: Mutation Models for Pedigree Likelihood Computations |
| validateMutationMatrix | Mutation matrix |
| validateMutationModel | Mutation models |