Assess Study Cohorts Using a Common Data Model

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Documentation for package ‘PhenotypeR’ version 0.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

addCodelistAttribute	Adds the cohort_codelist attribute to a cohort
codelistDiagnostics	Run codelist-level diagnostics
cohortDiagnostics	Run cohort-level diagnostics
databaseDiagnostics	Database diagnostics
getCohortExpectations	Get cohort expectations using an LLM
mockPhenotypeR	Function to create a mock cdm reference for mockPhenotypeR
phenotypeDiagnostics	Phenotype a cohort
populationDiagnostics	Population-level diagnostics
shinyDiagnostics	Create a shiny app summarising your phenotyping results
tableCohortExpectations	Create a table summarising cohort expectations