Identify Efficient Crossing Schemes for Gene Pyramiding

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Documentation for package ‘gpyramid’ version 0.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

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allCrosses	Generate all crosses from given parent set.
calcCost	Function to calculate N_total by the algorithm proposed by Sevin et al. (2004)
calcCostAll	Function to calculate the number of necessary individuals and generations as the crossing cost for all the crossing schemes. This is the wrapper function of calCost.
findPset	Find parent sets from the candidate cultivars
getFromAll	Function to get one crossing scheme from all the crossing schemes.
util_haplo	Util fuunction to generate haplotype dataframe from raw data.
util_recom_mat	Util function to generate recom_mat from raw data. It returens the recombination probability based on Halden's map function