FilteringIterator (htsjdk 5.0.0 API)

java.lang.Object

htsjdk.samtools.filter.FilteringSamIterator

htsjdk.samtools.filter.FilteringIterator

All Implemented Interfaces:: CloseableIterator<SAMRecord>, Closeable, AutoCloseable, Iterator<SAMRecord>

@Deprecated public class FilteringIterator extends FilteringSamIterator

Deprecated.

use FilteringSamIterator instead

Filtering Iterator which takes a filter and an iterator and iterates through only those records which are not rejected by the filter.

$Id$

Constructor Summary

Constructors

Constructor

Description

FilteringIterator(Iterator<SAMRecord> iterator, SamRecordFilter filter)

Deprecated.

FilteringIterator(Iterator<SAMRecord> iterator, SamRecordFilter filter, boolean filterByPair)

Deprecated.
Method Summary

Methods inherited from class FilteringSamIterator
close, hasNext, next, remove

Methods inherited from class Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface CloseableIterator
stream, toList

Methods inherited from interface Iterator
forEachRemaining

Constructor Details
- FilteringIterator
  
  public FilteringIterator(Iterator<SAMRecord> iterator, SamRecordFilter filter, boolean filterByPair)
  
  Deprecated.
- FilteringIterator
  
  public FilteringIterator(Iterator<SAMRecord> iterator, SamRecordFilter filter)
  
  Deprecated.