Package htsjdk.samtools.cram
package htsjdk.samtools.cram
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ClassDescriptionClass used to construct a BAI index for a CRAM file.A class representing CRAI index entry: file and alignment offsets for each slice.CRAI index used for CRAM files.Merges CRAM index files for (headerless) parts of a CRAM file into a single index file.Command-line tool for comparing two SAM/BAM/CRAM files record-by-record.Simple command-line tool for converting between SAM/BAM/CRAM formats, primarily for experimenting with CRAM 3.1 compression profiles.Created by edwardk on 8/13/15.Dumps per-DataSeries compression statistics from a CRAM file.