Package htsjdk.samtools.cram.compression
package htsjdk.samtools.cram.compression
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ClassesClassDescriptionUtility methods shared across CRAM 3.1 compression codecs (rANS, Range, Name Tokeniser, etc.), including uint7 encoding, bit-packing, and STRIPE data transformation.Abstract base class for CRAM external block compressors.CRAM external compressor that uses the rANS 4x8 entropy coder (CRAM 3.0).CRAM external compressor that uses the rANS Nx16 entropy coder (CRAM 3.1).Raw compressor that does no compression.An
ExternalCompressorthat tries multiple candidate compressors and selects the one that produces the smallest output.