Title: | Relative Importance of Regressors in Linear Models |
Version: | 2.2-7 |
Date: | 2023-10-04 |
Description: | Provides several metrics for assessing relative importance in linear models. These can be printed, plotted and bootstrapped. The recommended metric is lmg, which provides a decomposition of the model explained variance into non-negative contributions. There is a version of this package available that additionally provides a new and also recommended metric called pmvd. If you are a non-US user, you can download this extended version from Ulrike Groempings web site. |
Depends: | R(≥ 2.2.1), MASS, boot, survey, mitools, graphics |
Imports: | methods, corpcor |
Suggests: | care |
Maintainer: | Ulrike Groemping <ulrike.groemping@bht-berlin.de> |
License: | GPL-2 |
LazyLoad: | yes |
URL: | https://prof.bht-berlin.de/groemping/relaimpo/, https://prof.bht-berlin.de/groemping/ |
NeedsCompilation: | no |
Author: | Ulrike Groemping [aut, cre], Matthias Lehrkamp [ctb] |
Packaged: | 2023-10-04 09:11:39 UTC; groemping |
Repository: | CRAN |
Date/Publication: | 2023-10-04 15:10:02 UTC |
Package to calculate relative importance metrics for linear models
Description
relaimpo calculates several relative importance metrics for the linear model.
The recommended metrics are lmg
(R^2
partitioned by averaging over orders, like in Lindemann, Merenda and Gold (1980, p.119ff))
and pmvd
(a newly proposed metric by Feldman (2005), non-US version only).
For completeness, several other metrics are also on offer. Other packages with related topics: hier.part
, relimp
.
Details
relaimpo calculates the metrics and also offers the possibility of bootstrapping them and of displaying results in print and graphically.
It is possible to designate a subset of variables as adjustment variables that always stay in the model so that relative importance is only assessed among the remaining variables.
Models can have up to 2-way interactions that are treated hierarchically - i.e. an interaction is only allowed in a model that also contains all its main effects.
In case of interactions, only metric lmg
can be used.
Observations with missing values are by default excluded from the analysis for most functions.
The function mianalyze.relimp
allows to draw conclusions from a set of multiply imputed data sets.
This function is currently more restrictive than the rest of the package in terms of data types and models
that can be used (when summarizing the multiply imputed samples without calculating confidence intervals,
all possibilities available elsewhere are also applicable in mianalyze.relimp
).
relaimpo does accomodate complex survey designs by making use of the facilities in package survey. Currently, interactions and calculated variables cannot be combined with using a complex survey design in bootstrapping functions.
Acknowlegment
This package uses as an internal function the function nchoosek
from vsn, authored by Wolfgang Huber, available under LGPL.
Furthermore, it uses a modified version of the function carscore from care by Verena Zuber and Korbinian Strimmer.
Warning
lmg
and pmvd
are computer-intensive. Although they are calculated based on the
covariance matrix, which saves substantial computing time in comparison to carrying out actual regressions,
these methods still take quite long for problems with many regressors. Obviously,
this is particularly relevant in combination with bootstrapping.
Note
There are two versions of this package. The version on CRAN is globally licensed under GPL version 2 (or later).
There is an extended version with the interesting additional metric pmvd
that is licensed according to GPL version 2
under the geographical restriction "outside of the US" because of potential issues with US patent 6,640,204. This version can be obtained
from Ulrike Groempings website (cf. references section). Whenever you load the package, a display tells you, which version you are loading.
Author(s)
Ulrike Groemping, BHT Berlin
References
Chevan, A. and Sutherland, M. (1991) Hierarchical Partitioning. The American Statistician 45, 90–96.
Darlington, R.B. (1968) Multiple regression in psychological research and practice. Psychological Bulletin 69, 161–182.
Feldman, B. (2005) Relative Importance and Value. Manuscript (Version 1.1, March 19 2005), downloadable at https://papers.ssrn.com/sol3/papers.cfm?abstract_id=2255827
Genizi, A. (1993) Decomposition of R2 in multiple regression with correlated regressors. Statistica Sinica 3, 407–420. Downloadable at https://www3.stat.sinica.edu.tw/statistica/password.asp?vol=3&num=2&art=10
Groemping, U. (2006) Relative Importance for Linear Regression in R: The Package relaimpo Journal of Statistical Software 17, Issue 1. Downloadable at https://www.jstatsoft.org/v17/i01
Lindeman, R.H., Merenda, P.F. and Gold, R.Z. (1980) Introduction to Bivariate and Multivariate Analysis, Glenview IL: Scott, Foresman.
Zuber, V. and Strimmer, K. (2010) Variable importance and model selection by decorrelation. Preprint, downloadable at https://arxiv.org/abs/1007.5516
Go to https://prof.bht-berlin.de/groemping/relaimpo/ for further information and references.
See Also
calc.relimp
, booteval.relimp
, mianalyze.relimp
,
classesmethods.relaimpo
, package hier.part, package survey
Functions to Bootstrap Relative Importance Metrics
Description
These functions provide bootstrap confidence intervals for relative importances.
boot.relimp
uses the R package boot to do the actual bootstrapping of requested metrics
(which may take quite a while),
while booteval.relimp
evaluates the results and provides confidence intervals.
Output from booteval.relimp
is printed with a tailored print method, and a plot method
produces bar plots with confidence indication of the relative importance metrics.
Usage
## generic function
boot.relimp(object, ...)
## default S3 method
## Default S3 method:
boot.relimp(object, x = NULL, ..., b = 1000, type = "lmg",
rank = TRUE, diff = TRUE, rela = FALSE, always = NULL,
groups = NULL, groupnames = NULL, fixed=FALSE,
weights = NULL, design = NULL)
## S3 method for formula objects
## S3 method for class 'formula'
boot.relimp(formula, data, weights, na.action, ..., subset = NULL)
## S3 method for objects of class lm
## S3 method for class 'lm'
boot.relimp(object, type = "lmg", groups = NULL, groupnames=NULL, always = NULL,
..., b=1000)
## function for evaluating bootstrap results
booteval.relimp(bootrun, bty = "perc", level = 0.95,
sort = FALSE, norank = FALSE, nodiff = FALSE,
typesel = c("lmg", "pmvd", "last", "first", "betasq", "pratt", "genizi", "car"))
Arguments
object |
cf. |
formula |
cf. |
x |
cf. |
b |
is the number of bootstrap runs requested on boot.relimp (default: |
type |
cf. |
rank |
is a logical requesting bootstrapping of ranks ( |
diff |
is a logical requesting bootstrapping of pairwise differences in relative importance ( |
rela |
cf. |
always |
cf. |
groups |
cf. |
groupnames |
cf. |
weights |
cf. |
design |
cf. For a description of the bootstrap method's treatment of designs, see the details section. In the current version, using a design in bootstrapping must be considered EXPERIMENTAL. |
fixed |
is a logical requesting bootstrapping for a fixed design matrix (if TRUE). The default is bootstrapping for randomly drawn samples (fixed = FALSE). |
data |
cf. |
subset |
cf. |
na.action |
cf. |
... |
usable for further arguments, particularly all arguments of the default method can be given to all other methods |
bootrun |
is an object of class |
bty |
is the type of bootstrap interval requested (a character string),
as handed over to the function |
level |
is a single confidence level or a numeric vector of confidence levels. |
sort |
is a logical requesting output sorted by size of relative contribution ( |
norank |
is a logical that suppresses of rank letters ( |
nodiff |
is a logical that suppresses output of confidence intervals for differences ( |
typesel |
provides the metrics that are to be reported. Default: all available ones
(intersection of those available in object |
Details
Calculations of metrics are based on the function calc.relimp
.
Bootstrapping is done with the R package boot
,
resampling the full observation vectors by default (combinations of response, weights and regressors, cf. Fox (2002)).
If fixed=TRUE
is specified, bootstrapping is based on residuals rather than full observations,
keeping the X-variables fixed.
If the weights
option is used, weights are resampled together with the full observations,
and weighted contributions are calculated for each resample (no re-normalization is done within the resamples.)
Please note that usage of weights in linear models can have very different reasons.
One motivation is a different variability of different observations, where weights are the inverse variances.
This is the way weights
are treated in function lm
and also in calc.relimp
and in boot.relimp
,
if a vector of weights is given with the weights
option. Specifically, weights do not affect the
resampling probability in bootstrapping, i.e. each observation has the same probability to be included in resamples.
If the weights in a data frame represent the multiplicity of each observation (i.e. there are several units with
identical combination of values in the data, and the weights represent the number of units with exactly this value
pattern for each row of the data frame), they can also be directly used as weights in calc.relimp
for
calculating the metrics. However, such frequency weights cannot be appropriately accomodated in boot.relimp
;
instead, the data frame with frequencies has to be expanded to include one row for each unit before using the
resampling routine (e.g. using function untable
from package reshape or function expand.table
from package epitools.
In survey situations, weights are used to generate a more representative picture of the population:
an observation's weight is typically the number of units of the population that this single observed unit represents.
In this situation, there is no reason to consider observations with higher weights as less variable than observations
with lower weights; thus, while estimates can again be obtained treating the weights in the same way as mentioned before,
their usage in estimation of standard errors and in bootstrapping is different.
In order to appropriately accomodate survey weights for these purposes, it is not sufficient to only provide the
weights vector; instead, it is necessary to provide a design generated with package survey or an object of
class svyglm
(produced by function svyglm
) that includes the appropriate design information.
Clusters are a way to take care of dependency structures like in longitudinal data.
Thus, while relaimpo does not (currently) cover linear mixed models (e.g. produced by function lme
), it is possible to
accomodate clustered data by applying function svyglm
with linear link function and gaussian distribution
to a design that contains clusters. The bootstrapping approach subsequently takes care of the dependence by considering
clusters as sampling units. Users who want to use this approach can mimic the second example below.
If the design
option is used (experimental), resampling is done within package survey,
and the resampled contributions are also calculated within package survey. The results from these calculations
are plugged into an object from package boot, and confidence interval calculation is subsequently handled in
boot. The approach is considered experimental: so far no simulation studies have been conducted for
complex survey designs, and because of limited experience (in spite of thorough testing) it is not unlikely that
bugs will be found by users who are routinely using complex survey designs.
The output provides results for all selected relative importance metrics.
The output object can be printed and plotted (description of syntax: classesmethods.relaimpo
).
Printed output: In addition to the standard output of calc.relimp
(one row for each regressor, one column for each bootstrapped metric),
there is a table of confidence intervals for each selected metric
(one row per combination of regressor and metric).
This table is enhanced by information on rank confidence intervals,
if ranks have been bootstrapped (rank=TRUE
) and norank=FALSE
.
In addition, if differences have been bootstrapped (diff=TRUE
) and nodiff=FALSE
,
there is a table of estimated pairwise differences with confidence intervals.
Graphical output: Application of the plot method to the object created by booteval.relimp
yields barplot representations for all bootstrapped metrics (all in one graphics window). Confidence level (lev=
)
and number of characters in variable names to be used (names.abbrev=
) can be modified.
Confidence bounds are indicated on the graphs by added vertical lines.
par()
options can be used for modifying output (exceptions: mfrow
, oma
and
mar
are overridden by the plot method).
Value
The value of boot.relimp
is of class relimplmboot
. It is designed to be useful as input for booteval.relimp
and is not further described here.
booteval.relimp
returns an object of class relimplmbooteval
, the items of which can be accessed by
the $
or the @
extractors.
In addition to the items described for function calc.relimp
, which are also available here,
the following items may be of interest for further calculations:
metric.lower |
matrix of lower confidence bounds for “metric”: one row for each confidence level,
one column for each element of “metric”. “metric” can be any of |
metric.upper |
matrix of upper confidence bounds for “metric”: one row for each confidence level, one column for each element of “metric” |
metric.boot |
matrix of bootstrap results for “metric”: one row for each bootstrap run,
one column for each element of “metric”.
Here, “metric” can be chosen as any of the above-mentioned and also as |
nboot |
number of bootstrap runs underlying the evaluations |
level |
confidence levels |
Warning
The bootstrap confidence intervals should be used for exploratory purposes only. They can be somewhat liberal: Limited simulations for percentile intervals have shown that non-coverage probabilities can be up to twice the nominal probabilities. More investigations are needed.
Be aware that the method itself needs some computing time in case of many regressors. Hence, bootstrapping should be used with awareness of computing time issues.
relaimpo
is a package for univariate linear models.
Using relaimpo
on objects that inherit from class lm
but are not univariate linear model objects
may produce nonsensical results without warning. Objects of class mlm
or glm
with link functions other than identity
or family other than gaussian lead to an error message.
Note
There are two versions of this package. The version on CRAN is globally licensed under GPL version 2 (or later).
There is an extended version with the interesting additional metric pmvd
that is licensed according to GPL version 2
under the geographical restriction "outside of the US" because of potential issues with US patent 6,640,204. This version can be obtained
from Ulrike Groempings website (cf. references section). Whenever you load the package, a display tells you, which version you are loading.
Author(s)
Ulrike Groemping, BHT Berlin
References
Chevan, A. and Sutherland, M. (1991) Hierarchical Partitioning. The American Statistician 45, 90–96.
Darlington, R.B. (1968) Multiple regression in psychological research and practice. Psychological Bulletin 69, 161–182.
Feldman, B. (2005) Relative Importance and Value. Manuscript (Version 1.1, March 19 2005), downloadable at https://papers.ssrn.com/sol3/papers.cfm?abstract_id=2255827
Fox, J. (2002) Bootstrapping regression models. An R and S-PLUS Companion to Applied Regression: A web appendix to the book. https://socialsciences.mcmaster.ca/jfox/Books/Companion-2E/appendix/Appendix-Bootstrapping.pdf.
Genizi, A. (1993) Decomposition of R2 in multiple regression with correlated regressors. Statistica Sinica 3, 407–420. Downloadable at https://www3.stat.sinica.edu.tw/statistica/password.asp?vol=3&num=2&art=10
Groemping, U. (2006) Relative Importance for Linear Regression in R: The Package relaimpo Journal of Statistical Software 17, Issue 1. Downloadable at https://www.jstatsoft.org/v17/i01
Lindeman, R.H., Merenda, P.F. and Gold, R.Z. (1980) Introduction to Bivariate and Multivariate Analysis, Glenview IL: Scott, Foresman.
Zuber, V. and Strimmer, K. (2010) Variable importance and model selection by decorrelation. Preprint, downloadable at https://arxiv.org/abs/1007.5516
Go to https://prof.bht-berlin.de/groemping/relaimpo/ for further information and references.
See Also
relaimpo, calc.relimp
, mianalyze.relimp
,
classesmethods.relaimpo
Examples
#####################################################################
### Example: relative importance of various socioeconomic indicators
### for Fertility in Switzerland
### Fertility is first column of data set swiss
#####################################################################
data(swiss)
# bootstrapping
bootswiss <- boot.relimp(swiss, b = 100,
type = c("lmg", "last", "first", "pratt"),
rank = TRUE, diff = TRUE, rela = TRUE)
# for demonstration purposes only 100 bootstrap replications
#alternatively, use formula interface
bootsub <- boot.relimp(Fertility~Education+Catholic+Infant.Mortality, swiss,
subset=Catholic>40, b = 100, type = c("lmg", "last", "first", "pratt"),
rank = TRUE, diff = TRUE)
# for demonstration purposes only 100 bootstrap replications
#default output (percentily intervals, as of Version 2 of the package)
booteval.relimp(bootswiss)
plot(booteval.relimp(bootswiss))
#sorted printout, chosen confidence levels, chosen interval method
#store as object
result <- booteval.relimp(bootsub, bty="bca",
sort = TRUE, level=c(0.8,0.9))
#because of only 100 bootstrap replications,
#default bca intervals produce warnings
#output driven by print method
result
#result plotting with default settings
#(largest confidence level, names abbreviated to length 4)
plot(result)
#result plotting with modified settings (chosen confidence level,
#names abbreviated to chosen length)
plot(result, level=0.8,names.abbrev=5)
#result plotting with longer names shown vertically
par(las=2)
plot(result, level=0.9,names.abbrev=6)
#plot does react to options set with par()
#exceptions: mfrow, mar and oma are set within the plot routine itself
#####################################################################
### Example: bootstrapping clustered data
### data taken from example.lmm of package lmm
### y is change in pulse (heart beats per minute)
### 15 min (occ 1 to 3) and 90 min (occ 4 to 6) after
### treatment with Placebo (occ 1 or 4) low (occ 2 or 5)
### or high (occ 3 or 6) dose of marihuana
### each of 9 subjects is observed under most or all
### of the 6 possible conditions
#####################################################################
## create example data from package lmm
y <- c(16,20,16,20,-6,-4,
12,24,12,-6,4,-8,
8,8,26,-4,4,8,
20,8,20,-4,
8,4,-8,22,-8,
10,20,28,-20,-4,-4,
4,28,24,12,8,18,
-8,20,24,-3,8,-24,
20,24,8,12)
occ <- c(1,2,3,4,5,6,
1,2,3,4,5,6,
1,2,3,4,5,6,
1,2,5,6,
1,2,3,5,6,
1,2,3,4,5,6,
1,2,3,4,5,6,
1,2,3,4,5,6,
2,3,4,5)
subj <- c(1,1,1,1,1,1,
2,2,2,2,2,2,
3,3,3,3,3,3,
4,4,4,4,
5,5,5,5,5,
6,6,6,6,6,6,
7,7,7,7,7,7,
8,8,8,8,8,8,
9,9,9,9)
### manual creation of dummies
### reference category placebo after 90min (occ=4)
dumm1 <- as.numeric(occ==1)
dumm2 <- as.numeric(occ==2)
dumm3 <- as.numeric(occ==3)
dumm5 <- as.numeric(occ==5)
dumm6 <- as.numeric(occ==6)
## create data frame
dat <- data.frame(y,dumm1,dumm2,dumm3,dumm5,dumm6,subj)
### create design with clusters
des <- svydesign(id=~subj,data=dat)
### apply bootstrapping
### using the design with subjects as clusters implies that
### clusters are generally kept in or excluded as a whole
### of course, b=100 is too small, only chosen for speed of package creation
bt <- boot.relimp(y~dumm1+dumm2+dumm3+dumm5+dumm6,data=dat,
design=des,b=100,type=c("lmg","first","last","betasq","pratt"))
### calculate and display results
booteval.relimp(bt,lev=0.9,nodiff=TRUE)
Function to calculate relative importance metrics for linear models
Description
calc.relimp calculates several relative importance metrics for the linear model.
The recommended metrics are lmg
(R^2
partitioned by averaging over orders, like in Lindemann, Merenda and Gold (1980, p.119ff))
and pmvd
(a newly proposed metric by Feldman (2005) that is provided in the non-US version of the package only).
For completeness and comparison purposes, several other metrics are also on offer (cf. e.g. Darlington (1968)).
Usage
## generic function
calc.relimp(object, ...)
## default S3 method
## Default S3 method:
calc.relimp(object, x = NULL, ...,
type = "lmg", diff = FALSE, rank = TRUE, rela = FALSE, always = NULL,
groups = NULL, groupnames = NULL, weights=NULL, design=NULL)
## S3 method for formula object
## S3 method for class 'formula'
calc.relimp(formula, data, weights, na.action, ..., subset=NULL)
## S3 method for objects of class lm
## S3 method for class 'lm'
calc.relimp(object, type = "lmg", groups = NULL, groupnames=NULL, always = NULL, ...)
Arguments
object |
The class of this object determines which of the methods is used:
There are special methods for output objects from function Thus, object can be a formula (e.g. OR the output of a linear model call (inheriting from class The restrictions on usage of interactions listed under item formula below also apply to linear model objects. OR the covariance matrix of a response y and regressors x, (e.g. obtained by cov(cbind(y,x)), if y is a column vector of response values and x a corresponding matrix of regressors) OR a (raw) data matrix or data frame with the response variable in the first column OR a response vector or one-column matrix,
if |
formula |
The first object, if a formula is to be given; one response only. Interaction terms are currently limited to second-order. Note: If several interaction terms are given, calculations may be very resource intensive, if these are all connected (e.g. with A:B, B:C, C:D, all A,B,C,D are connected, while with A:B, C:D, D:E there are separate groups A,B and C,D,E). Interaction terms occurring in always do not increase resource usage (but are only permitted if the respective main effects also occur in always). Interactions and groups currently cannot be used simultaneously. |
x |
a (raw) data matrix or data frame containing the regressors,
if OR NULL, if |
type |
can be a character string, character vector or list of character strings.
It is the collection of metrics that are to be calculated.
Available metrics: |
diff |
logical; if TRUE, pairwise differences between the relative contributions are calculated; default FALSE |
rank |
logical; if TRUE, ranks of regressors in terms of relative contributions are calculated; default TRUE |
rela |
is a logical requesting relative importances summing to 100% ( |
always |
is a vector of column numbers or names of variables to be always in the
model (adjusted for). Valid numbers are 2 to (number of regressors + 1) (1 is reserved for the response),
valid character strings are all column names of Relative importance is only assessed for the variables not selected in This option currently does not work for metrics |
groups |
is a list of vectors of column numbers or names of variables to be combined into groups.
If only one group is needed, a vector can be given. The numbers and character strings needed are of the same form
as for Relative importance is only allocated between groups of regressors, no subdivision within groups is calculated.
Regressors that do not occur in any group are included as singletons.
A regressor must not occur in |
groupnames |
is a vector of names for the variable groups to be used for annotation of output. |
weights |
is a vector of case weights for the observations in the data frame (or matrix).
You can EITHER specify |
design |
is a design object of class Also note that care is needed when using |
data |
if first object is of class formula: an optional matrix or data frame that the variables in formula and subset come from; if it is omitted, all names must be meaningful in the environment from which calc.relimp is called |
subset |
if first object is of class formula:
an optional expression indicating the subset of the observations of |
na.action |
if first object is of class formula:
an optional function that indicates what should happen when the data contain 'NA's.
The default is first, any na.action attribute of data, second the setting given in the call to calc.relimp,
third the na.action setting of options. Possible choices are "na.fail",
(print an error message and terminate if there are any incomplete observations),
"na.omit" or "na.exclude" (equivalent for package |
... |
usable for further arguments, particularly most arguments of default method can be given to all other methods (exception: weights and design cannot be given to lm-method) |
Details
- lmg
is the
R^2
contribution averaged over orderings among regressors, cf. e.g. Lindeman, Merenda and Gold 1980, p.119ff or Chevan and Sutherland (1991).- pmvd
is the proportional marginal variance decomposition as proposed by Feldman (2005) (non-US version only). It can be interpreted as a weighted average over orderings among regressors, with data-dependent weights.
- last
is each variables contribution when included last, also sometimes called usefulness.
- first
is each variables contribution when included first, which is just the squared covariance between y and the variable.
- betasq
is the squared standardized coefficient.
- pratt
is the product of the standardized coefficient and the correlation.
- genizi
is the
R^2
decomposition according to Genizi 1993- car
is the
R^2
decomposition according to Zuber and Strimmer 2010, also available from package care (squares of scores produced by functioncarscore
Each metric is calculated using the internal function “metric”calc
, e.g. lmgcalc
.
Five of the metrics in calc.relimp
(lmg
, pmvd
, pratt
, genizi
and car
),
decompose the model R^2
.
calc.relimp
(lmg
, pmvd
, pratt
, genizi
and car
) sum to the R^2
that is to be decomposed,
if rela = FALSE
and to 100pct if rela = TRUE
.
The other metrics also (artificially) sum to 100pct if rela = TRUE
.
If rela = FALSE
, they are given relative to var(y) (or the conditional variance of y after adjusting out the variables
requested in always
) but do not sum to R^2
.
If always
requests some variables to be always in the model, these are conditioned upon
(i.e. included into the model first). Only the remaining R^2
that is not explained by
these variables is decomposed among the other regressors. This currently does not work for metrics genizi
and car
.
Four of the metrics, lmg
, pmvd
, first
and last
,
are related to the order in which the variables are included into the model.
For these it is possible to consider the variables in groups that are always entered into the model together.
Note that relaimpo can only provide metric lmg
for models with interactions (2-way interactions only).
It averages only over those orders, for which the interactions enter the model after both their main effects.
Note that there are different types of weights, weights indicating the variability of the response
(observations with a more variable responses receive a lower weight than those with a less variable response,
like in the Aitken estimator), frequency weights indicating the number of observations with exactly the observed
data pattern of the current observation, or weights indicating the number of population units represented by the
current observation (inverse sampling probability, weights typically used in survey situations). All three types of
weight alike can be handed to function calc.relimp
using the weights=
option. Note, however, that they
have to be treated differently for bootstrapping (cf. boot.relimp
).
Data from complex surveys can be treated by providing a survey design with design=
-option.
For calc.relimp
, it is also sufficient to provide the weights derived from the design using the
weights=
-option.
calc.relimp
cannot handle data with missing values directly. It applies complete-case analysis,
i.e. drops all units with any missing values by default. While this can be appropriate, if there are only few
missing values, data with more severe missingness issues need special treatment. Package relaimpo
offers the function mianalyze.relimp
that handles multiply-imputed datasets (that can be created
by several other R-packages). Currently, possibilities in this function are limited due to the fact that
it uses complex survey designs and bootstrapping which do not (yet) go together well with factors, interactions
and calculated quantities in formulae.
Value
var.y |
the variance of the response |
R2 |
the coefficient of determination, |
R2.decomp |
the part of the coefficient of determination that is decomposed among the variables under investigation |
lmg |
vector of relative contributions obtained from the |
lmg.diff |
vector of pairwise differences between relative contributions obtained from the |
lmg.rank |
rank of the regressors relative contributions obtained from the |
metric , metric.diff , metric.rank |
analogous to |
ave.coeffs |
average coefficients for variables not not requested by always only for models of different sizes; note that coefficients refer to modeling residuals after adjusting out variables listed in always (both from response and other explanatory variables) |
namen |
names of variables, starting with response |
type |
character vector of metrics available |
rela |
Have metrics been normalized to sum 100% ? |
always |
column numbers of variables always in the model;
in case of factors, the column numbers given here are not identical to those in
the call to |
alwaysnam |
names of variables always in the model |
call |
contains the call that generated the object |
Warning
lmg
and pmvd
are computer-intensive. Although they are calculated based on the
covariance matrix, which saves substantial computing time in comparison to carrying out actual regressions,
these methods still take quite long for problems with many regressors.
relaimpo
is a package for univariate linear models.
Using relaimpo
on objects that inherit from class lm
but are not univariate linear model objects
may produce nonsensical results without warning. Objects of class mlm
or glm
with link functions other than identity
or family other than gaussian lead to an error message.
Note
There are two versions of this package. The version on CRAN is globally licensed under GPL version 2 (or later).
There is an extended version with the interesting additional metric pmvd
that is licensed according to GPL version 2
under the geographical restriction "outside of the US" because of potential issues with US patent 6,640,204.
This version can be obtained from Ulrike Groempings website (cf. references section).
Whenever you load the package, a display tells you, which version you are loading.
Author(s)
Ulrike Groemping, BHT Berlin
References
Chevan, A. and Sutherland, M. (1991) Hierarchical Partitioning. The American Statistician 45, 90–96.
Darlington, R.B. (1968) Multiple regression in psychological research and practice. Psychological Bulletin 69, 161–182.
Feldman, B. (2005) Relative Importance and Value. Manuscript (Version 1.1, March 19 2005), downloadable at https://papers.ssrn.com/sol3/papers.cfm?abstract_id=2255827
Genizi, A. (1993) Decomposition of R2 in multiple regression with correlated regressors. Statistica Sinica 3, 407–420. Downloadable at https://www3.stat.sinica.edu.tw/statistica/password.asp?vol=3&num=2&art=10
Groemping, U. (2006) Relative Importance for Linear Regression in R: The Package relaimpo Journal of Statistical Software 17, Issue 1. Downloadable at https://www.jstatsoft.org/v17/i01
Lindeman, R.H., Merenda, P.F. and Gold, R.Z. (1980) Introduction to Bivariate and Multivariate Analysis, Glenview IL: Scott, Foresman.
Zuber, V. and Strimmer, K. (2010) Variable importance and model selection by decorrelation. Preprint, downloadable at https://arxiv.org/abs/1007.5516
Go to https://prof.bht-berlin.de/groemping/relaimpo/ for further information and references.
See Also
relaimpo, booteval.relimp
, mianalyze.relimp
,
classesmethods.relaimpo
Examples
#####################################################################
### Example: relative importance of various socioeconomic indicators
### for Fertility in Switzerland
### Fertility is first column of data set swiss
#####################################################################
data(swiss)
calc.relimp(swiss,
type = c("lmg", "last", "first", "betasq", "pratt", "genizi", "car") )
# calculation of all available relative importance metrics
# non-US version offers the additional metric "pmvd",
# i.e. call would be
# calc.relimp(cov(swiss),
# type = c("lmg", "pmvd", "last", "first", "betasq, "pratt"),
# rela = TRUE )
## same analysis with formula or lm method and a few modified options
crf <- calc.relimp(Fertility~Agriculture+Examination+Education+Catholic+Infant.Mortality,swiss,
subset = Catholic>40,
type = c("lmg", "last", "first", "betasq", "pratt"), rela = TRUE )
crf
linmod <- lm(Fertility~Agriculture+Examination+Education+Catholic+Infant.Mortality,swiss)
crlm <- calc.relimp(linmod,
type = c("lmg", "last", "first", "betasq", "pratt", "genizi", "car"), rela = TRUE )
plot(crlm)
# bar plot of the relative importance metrics
#of statistical interest in this context: correlation matrix
cor(swiss)
#demonstration of conditioning on one regressor using always
calc.relimp(swiss,
type = c("lmg", "last", "first", "betasq", "pratt"), rela = FALSE,
always = "Education" )
# using calc.relimp with grouping of two regressors
# and weights (not reasonable here, purely for demo purposes)
calc.relimp(swiss,
type = c("lmg", "last", "first"), rela = FALSE,
groups = c("Education","Examination"), weights = abs(-23:23) )
# using calc.relimp with grouping of two regressors
# and a design object (not reasonable here, purely for demo purposes)
des <- svydesign(~1, data=swiss, weights=~abs(-23:23))
calc.relimp(swiss,
type = c("lmg", "last", "first"), rela = FALSE,
groups = c("Education","Examination"), groupnames ="EduExam", design = des)
# calc.relimp with factors (betasq and pratt not possible)
# (calc.relimp would not be necessary here,
# because the experiment is balanced)
calc.relimp(1/time~poison+treat,data=poisons, rela = FALSE,
type = c("lmg", "last", "first"))
# including also the interaction (lmg possible only)
calc.relimp(1/time~poison*treat,data=poisons, rela = FALSE)
Classes and Methods in Package relaimpo
Description
Output objects from package relaimpo have classes relimplm
(output from calc.relimp), relimplmboot
(output from boot.relimp), relimplmbooteval
(output from booteval.relimp) or relimplmbootMI
.
For classes relimplm
, relimplmbooteval
and relimplmbootMI
, there are methods for plotting and printing,
usage of which is described below. For class relimplmbootMI
, there is in addition a summary-method,
which produces a less detailed output than the show / print - method.
For classes relimplm
, relimplmbooteval
and relimplmbootMI
,
there is in addition a method for extracting slots of the class with $
.
Usage
## S3 method for class 'relimplm'
print(x,...,show.coeffs = ifelse(any(c("lmg", "pmvd") %in% x@type)
& is.null(x@always), TRUE, FALSE))
## S3 method for class 'relimplm'
plot(x,...,names.abbrev=4, ylim=NULL, main=NULL, cex.title=1.5)
## S3 method for class 'relimplmbooteval'
print(x,...)
## S3 method for class 'relimplmbootMI'
print(x,...)
## S3 method for class 'relimplmbooteval'
plot(x, ..., lev=max(x@level), names.abbrev=4, ylim=NULL,
main=NULL, cex.title=1.5)
## S3 method for class 'relimplmbootMI'
plot(x, ..., lev=max(x@level), names.abbrev=4, ylim=NULL,
main=NULL, cex.title=1.5)
## S3 method for class 'relimplmbootMI'
summary(object, ..., lev = max(object@level))
Arguments
x |
|
show.coeffs |
|
object |
|
... |
further arguments to functions |
names.abbrev |
|
ylim |
The plot routines try to use appropriate scaling. If adjustments are needed, |
main |
The plot routine uses a default title based on the reponses name.
If adjustments are desired, |
cex.title |
|
lev |
|
Details
This documentation part describes S3 methods. In addition there are S4 methods for show
which
coincide with the S3 methods for print
and an S4 method for coercing objects of relimplm
to lists
(of their numeric elements).
Print (and show) methods produce annotated output for calc.relimp
, booteval.relimp
, and
mianalyze.relimp
(or the objects produced by these functions). Since version 2.1, calc.relimp
provides averaged coefficients for different sub model sizes (slot ave.coeffs
of class relimplm
),
if metrics based on averaging over orderings (lmg
and/or pmvd
) are calculated.
These are per default printed if the slot always
of x
is NULL
.
If some variables were forced into all models (non-NULL always
), the averaged coefficients
refer to the adjusted model after taking residuls from regressions on the always
-columns
of the X-matrix for both response and the other columns of the X-matrix. The reason is that these could be
easily and cheaply implemented into the existing code and do correspond to sub models relevant
for lmg
and pmvd
. Users who are interested in these coefficients, can set option show.coeffs=TRUE
in spite of non-NULL always
.
The plot methods produce barplots of relative contributions,
either of the metrics alone for output objects of class relimplm
from function calc.relimp
,
or of the metrics with lines indicating confidence intervals for output objects of class relimplmbooteval
from function booteval.relimp
or relimplmbootMI
from function booteval.relimp
.
Most par()
options can be set and should work on plot.
Exceptions: mfrow, oma and mar are set by the plot function,
depending on the number of metrics to plot and the amount of annotating text required.
The summary-method for class relimplmbootMI
allows to quickly display brief output and to change
the confidence level versus the level used in the original run (with interval bounds stored in the
“metric”.lower and “metric”.upper slots and displayed by print and show methods).
Because of a defined S3-extraction method,
slots of classes relimplm
, relimplmbooteval
and relimplmbootMI
can be extracted not only
with the @
extractor but also with $
.
Hence, output elements from functions calc.relimp
, booteval.relimp
, and mianalyze.relimp
can be extracted as though the output objects were lists.
Note that there also is an an internally-used class relimplmtest that permits the internal function calc.relimp_default.intern to output further detail needed for usage from within other funtions.
Author(s)
Ulrike Groemping, BHT Berlin
References
Go to https://prof.bht-berlin.de/groemping/ for further information and references.
See Also
relaimpo, calc.relimp
, booteval.relimp
,
mianalyze.relimp
,
relimplm-class
, relimplmboot-class
,
relimplmbooteval-class
, relimplmbootMI-class
Function to do relative importance calculations based on multiply imputed datasets
Description
The function mianalyze.relimp takes a list of imputed data frames (or matrices), calculates relative importance metrics for each of these and combines these metrics into overall estimates with estimated variances according to the method by Rubin (1987). The output object can be summarized, printed and plotted.
Usage
mianalyze.relimp(implist, level = 0.95, sort = FALSE, ..., b = 50, type = "lmg",
diff = TRUE, no.CI = FALSE, rela = FALSE, always = NULL, groups = NULL,
groupnames = NULL, deslist = NULL, bootlist.out = FALSE, formula = NULL,
weights = NULL, strata=NULL, ids=NULL)
Arguments
implist |
list of data frames or matrices containing multiply-imputed datasets,
or object of class If no formula is given, the first column of each data frame/matrix is assumed to be the response variable, the other columns are regressors. If a list of designs is also given, the |
level |
is a single confidence level (between 0.5 and 1) |
sort |
is a logical requesting output sorted by size of relative contribution
( |
... |
Further arguments, currently none available |
b |
is the number of bootstrap runs requested on boot.relimp (default: |
type |
cf. |
diff |
is a logical requesting bootstrapping of pairwise differences in relative importance ( |
no.CI |
if set to TRUE, suppresses calculation of confidence intervals and only averages estimated metrics
from all imputed data sets in implist. Currently, |
rela |
cf. |
always |
cf. |
groups |
cf. |
groupnames |
cf. |
deslist |
is a list of design object of class If deslist is not given, the function creates a list of designs using |
bootlist.out |
If TRUE, the individual bootstrap results for each multiply imputed data set are stored in the bootlist slot of the output object (may be storage-intensive). |
formula |
cf. |
weights |
is a vector of case weights for the observations in the data frame (or matrix).
You can EITHER specify |
strata |
is a strata request that will be handed to function |
ids |
is an id-request that will be handed to function |
Details
Multiple imputation is a contemporary method for handling data with a substantial missing value problem. It produces a number of completed data sets (e.g. 10) the inference from which is subsequently combined. The most frequently used way of combination is the one by Rubin: estimates from the different completed data sets are averaged, and the variance is estimated by combining the average over the estimated variances (within imputation variance) with an appropriately-scaled variance between estimates, and confidence intervals are obtained by using a t-distribution with appropriately chosen degrees of freedom.
The variance-covariance matrix of the vector of estimates for each individual completed data set is obtained
from function withReplicates in package survey based on survey's bootstrap replication weights.
On request (bootlist.out=TRUE
), the underlying bootstrap resamples are also stored in the
bootlist
-slot of the output object. In this case, list elements of the bootlist
-slot
are objects of class relimplmboot
and can be processed by function booteval.relimp
.
This can help in getting an impression whether the overall aggregated confidence intervals are heavily distorted
towards symmetry. If such sanity-checking is intended, the default value for b
should be substantially
increased.
Function mianalyze.relimp
needs a list of multiply-imputed data sets or an object of class
imputationList
for input.
Multiply imputed data sets can - within R - be obtained from various packages. Hints for creating lists
of the form needed for mianalyze.relimp
are given below for users of functions aregImpute
,
mice
, and amelia
. Users of packages norm, cat, mix, or pan
(who have managed to operate these extremely uncomfortable packages) can of course also produce lists of
imputed data sets (only less comfortably).
For an object imp
of class mids
obtained from function mice
in package mice,
the code
lapply(as.list(1:imp$m),function(obj) complete(imp,action=obj))
produces a list of multiply-imputed data sets as needed for function mianalyze.relimp
.
For an object f
of class aregImpute
produced by function aregImpute
in package Hmisc,
lapply(as.list(1:f$m),function(obj) impute(imp,imputation=obj))
produces the required list of multiply-imputed data sets.
For an object output
produced by function amelia
in package Amelia, the code
output[1:output$amelia.args$m]
produces the list of multiply-imputed data sets as needed for function mianalyze.relimp
.
For multiple imputation, practice is in many cases ahead of theory; this is no different with function
mianalyze.relimp
. Users should note that the validity of confidence intervals has only been proven for
likelihood-based analyses. Since the metrics calculated in relaimpo are not strictly likelihood-based,
the confidence intervals from function mianalyze.relimp
must be considered approximate and experimental.
Value
The value returned by function mianalyze.relimp
is an object of class relimplmbootMI
(if no.CI = FALSE
, default) or an object of class relimplm
(if no.CI=TRUE).
It can be printed, plotted and summarized using special methods.
For extracting its items, the @
or $
extractors can be used.
In addition to the items described for function calc.relimp
, which are also available here,
the following items from class relimplmbootMI
may be of interest for further calculations:
metric.lower |
matrix of lower confidence bounds for “metric”: one row for each confidence level,
one column for each element of “metric”. “metric” can be any of |
metric.upper |
matrix of upper confidence bounds for “metric”: one row for each confidence level, one column for each element of “metric” |
nboot |
number of bootstrap runs underlying the evaluations |
level |
confidence level |
MIresult |
object of class |
bootlist |
only available if bootlist.out=TRUE has been chosen;
list of objects of class boot.relimp; each list element can be input to function
|
Warning
The confidence intervals produced here should be used for exploratory purposes only.
They can be somewhat liberal and are likely to be too symmetric particularly for small data sets.
The confidence intervals produced by function mianalyze.relimp
need further research into their behaviour
and are currently considered experimental.
Be aware that the methods themselves (lmg
and even more pmvd
) need some computing time in case of
many regressors. Hence, bootstrapping of multiple data sets should be used with awareness of computing time issues.
Note
There are two versions of this package. The version on CRAN is globally licensed under GPL version 2 (or later).
There is an extended version with the interesting additional metric pmvd
that is licensed according to GPL version 2
under the geographical restriction "outside of the US" because of potential issues with US patent 6,640,204. This version can be obtained
from Ulrike Groempings website (cf. references section). Whenever you load the package, a display tells you, which version you are loading.
Author(s)
Ulrike Groemping, BHT Berlin
References
Chevan, A. and Sutherland, M. (1991) Hierarchical Partitioning. The American Statistician 45, 90–96.
Darlington, R.B. (1968) Multiple regression in psychological research and practice. Psychological Bulletin 69, 161–182.
Feldman, B. (2005) Relative Importance and Value. Manuscript (Version 1.1, March 19 2005), downloadable at https://papers.ssrn.com/sol3/papers.cfm?abstract_id=2255827
Genizi, A. (1993) Decomposition of R2 in multiple regression with correlated regressors. Statistica Sinica 3, 407–420. Downloadable at https://www3.stat.sinica.edu.tw/statistica/password.asp?vol=3&num=2&art=10
Groemping, U. (2006) Relative Importance for Linear Regression in R: The Package relaimpo Journal of Statistical Software 17, Issue 1. Downloadable at https://www.jstatsoft.org/v17/i01
Lindeman, R.H., Merenda, P.F. and Gold, R.Z. (1980) Introduction to Bivariate and Multivariate Analysis, Glenview IL: Scott, Foresman.
Little, R.J.A. and Rubin, D.B. (2002) Statistical Analysis with Missing Data, Wiley, New York.
Zuber, V. and Strimmer, K. (2010) Variable importance and model selection by decorrelation. Preprint, downloadable at https://arxiv.org/abs/1007.5516
Go to https://prof.bht-berlin.de/groemping/ for further information and references.
See Also
relaimpo, calc.relimp
, booteval.relimp
,
classesmethods.relaimpo
Examples
## smi contains a list of 5 imputed datasets (class imputationList) from package mitools
## (first element of smi is list of data frames)
## it is not a well-suited example for relative importance but easily available for demonstrating
## multiple imputation-related functionality
data(smi)
## obtain averaged estimates only, without confidence intervals
## works with factors and interactions
mianalyze.relimp(smi[[1]], formula = cistot ~ drkfre+sex+wave, no.CI = TRUE)
## for obtaining all individual estimates, use lapply:
smi.cr.list <- lapply(smi[[1]], function(obj) calc.relimp(cistot ~ drkfre+sex+wave, data=obj))
## display result for first individual imputed data set
smi.cr.list[[1]]
## obtain confidence intervals,
## currently only usable for models without calculated variables, factors, groups, interactions
## call without using weights, strata, clusters or a design list
mianalyze.relimp(smi[[1]], formula = cistot ~ mdrkfre+sex+wave)
## call using the id column (identical in all smi data sets) for cluster structure
ident <- smi[[1]][[1]]$id
mitest <- mianalyze.relimp(smi[[1]], formula = cistot ~ mdrkfre+sex+wave, ids=ident)
mitest
## postprocess: look at intervals with different confidence level
summary(mitest,lev=0.8)
## call with design list
deslist <- lapply(smi[[1]], function(obj) svydesign(~id,strata=~sex,weights=~cistot,data=obj))
mitest <- mianalyze.relimp(smi[[1]], formula = cistot ~ mdrkfre+sex+wave, deslist=deslist,
level=c(0.8))
mitest
Class relimplm
Description
This is the class of output objects from the function calc.relimp
in package relaimpo. Its elements are described in the documentation of calc.relimp
.
Objects from the Class
Objects should only be created by calls to the function calc.relimp
.
Slots
var.y
:Object of class
"numeric"
R2
:Object of class
"numeric"
R2.decomp
:Object of class
"numeric"
lmg
:Object of class
"numeric"
pmvd
:Object of class
"numeric"
first
:Object of class
"numeric"
last
:Object of class
"numeric"
betasq
:Object of class
"numeric"
pratt
:Object of class
"numeric"
genizi
:Object of class
"numeric"
car
:Object of class
"numeric"
lmg.rank
:Object of class
"numeric"
pmvd.rank
:Object of class
"numeric"
first.rank
:Object of class
"numeric"
last.rank
:Object of class
"numeric"
betasq.rank
:Object of class
"numeric"
pratt.rank
:Object of class
"numeric"
genizi.rank
:Object of class
"numeric"
car.rank
:Object of class
"numeric"
lmg.diff
:Object of class
"numeric"
pmvd.diff
:Object of class
"numeric"
first.diff
:Object of class
"numeric"
last.diff
:Object of class
"numeric"
betasq.diff
:Object of class
"numeric"
pratt.diff
:Object of class
"numeric"
genizi.diff
:Object of class
"numeric"
car.diff
:Object of class
"numeric"
namen
:Object of class
"character"
: variable names, starting with name for responsenobs
:Object of class
"numeric"
: number of valid observations used in analysis (available only if calculations are based on raw data)ave.coeffs
:Object of class
"matrix"
: average coefficients for models of different sizestype
:Object of class
"character"
: metrics that have been calculatedrela
:Object of class
"logical"
: TRUE means that metrics have been normalized to sum 100pctalways
:Object of class
"numintnull"
: variables always in the model (adjusted for), in terms of columns in the model matrix (i.e. in case of factors in the model, there are more entries than in the call to functioncalc.relimp
; first possible column is 2 (1 reserved for response))alwaysnam
:Object of class
"charnull"
: variable names of variables always in modelgroupdocu
:Object of class
"list"
: information on group definitionscall
:Object of class
"langnull"
: the call that created the object
Methods
This documentation section documents S4 methods only.
There are also S3-methods for printing, plotting and extracting slots with $
.
For their usage, see classesmethods.relaimpo
.
- coerce
S4-method: If an object of this class is coerced to list by
as(object, "list")
, the slots are output to the list in the following order:var.y
,R2
,lmg
,lmg.rank
,lmg.diff
, next three in non-US version only:pmvd
,pmvd.rank
,pmvd.diff
,last
,last.rank
,last.diff
, ...,pratt
,pratt.rank
,pratt.diff
,namen
,type
,rela
,always
,alwaysnam
- show
S4-method: identical to
print
Author(s)
Ulrike Groemping, BHT Berlin
See Also
calc.relimp
, print.relimplm
, plot.relimplm
, relaimpo
Class relimplmboot
Description
This is the class for output objects from function boot.relimp
. It is needed as input to function booteval.relimp
.
Objects from the Class
Objects should only be created by calls to the function boot.relimp
.
Slots
boot
:Object of class
"boot"
, output from bootstrappingtype
:Object of class
"character"
, metrics that have been bootstrappednboot
:Object of class
"numeric"
, number of bootstrap runsrank
:Object of class
"logical"
, have ranks been bootstrapped ?diff
:Object of class
"logical"
, have differences been bootstrapped ?rela
:Object of class
"logical"
, have the metrics been forced to add up to 100pct (TRUE) or not?fixed
:Object of class
"logical"
, has bootstrapping been done for fixed (TRUE) or random (FALSE) regressors?namen
:Object of class
"character"
: variable names of all variables (y and the regressors)nobs
:Object of class
"numeric"
: number of valid observations used in calculationsalways
:Object of class
"numintnull"
: variables always in the modelalwaysnam
:Object of class
"charnull"
: variable names of variables always in modelgroupdocu
:Object of class
"list"
: information on group definitionswt
:Object of class
"numintnull"
: observation weightsvcov
:Object of class
"numintmatnull"
: variance-covariance matrix of the estimatecall
:Object of class
"langnull"
: the call that created the object
Methods
This documentation section documents S4 methods only. There is an analogous S3-method for printing.
- show
S4 method: identical to
print
Author(s)
Ulrike Groemping, BHT Berlin
See Also
boot.relimp
, booteval.relimp
,
relimplmbooteval-class
,relimplmbootMI-class
Class relimplmbootMI
Description
Output object from function mianalyze.relimp
, described there.
Objects from the Class
Objects should only be created by calls to function mianalyze.relimp
.
Slots
lmg.lower
:Object of class
"matrix"
lmg.upper
:Object of class
"matrix"
lmg.rank.lower
:Object of class
"matrix"
lmg.rank.upper
:Object of class
"matrix"
lmg.diff.lower
:Object of class
"matrix"
lmg.diff.upper
:Object of class
"matrix"
pmvd.lower
:Object of class
"matrix"
pmvd.upper
:Object of class
"matrix"
pmvd.rank.lower
:Object of class
"matrix"
pmvd.rank.upper
:Object of class
"matrix"
pmvd.diff.lower
:Object of class
"matrix"
pmvd.diff.upper
:Object of class
"matrix"
last.lower
:Object of class
"matrix"
last.upper
:Object of class
"matrix"
last.rank.lower
:Object of class
"matrix"
last.rank.upper
:Object of class
"matrix"
last.diff.lower
:Object of class
"matrix"
last.diff.upper
:Object of class
"matrix"
first.lower
:Object of class
"matrix"
first.upper
:Object of class
"matrix"
first.rank.lower
:Object of class
"matrix"
first.rank.upper
:Object of class
"matrix"
first.diff.lower
:Object of class
"matrix"
first.diff.upper
:Object of class
"matrix"
betasq.lower
:Object of class
"matrix"
betasq.upper
:Object of class
"matrix"
betasq.rank.lower
:Object of class
"matrix"
betasq.rank.upper
:Object of class
"matrix"
betasq.diff.lower
:Object of class
"matrix"
betasq.diff.upper
:Object of class
"matrix"
pratt.lower
:Object of class
"matrix"
pratt.upper
:Object of class
"matrix"
pratt.rank.lower
:Object of class
"matrix"
pratt.rank.upper
:Object of class
"matrix"
pratt.diff.lower
:Object of class
"matrix"
pratt.diff.upper
:Object of class
"matrix"
genizi.lower
:Object of class
"matrix"
genizi.upper
:Object of class
"matrix"
genizi.rank.lower
:Object of class
"matrix"
genizi.rank.upper
:Object of class
"matrix"
genizi.diff.lower
:Object of class
"matrix"
genizi.diff.upper
:Object of class
"matrix"
car.lower
:Object of class
"matrix"
car.upper
:Object of class
"matrix"
car.rank.lower
:Object of class
"matrix"
car.rank.upper
:Object of class
"matrix"
car.diff.lower
:Object of class
"matrix"
car.diff.upper
:Object of class
"matrix"
MIresult
:Object of class
"MIresult"
est
:Object of class
"numintnull"
vcov
:Object of class
"nummatnull"
bootlist
:Object of class
"listnull"
, list of objects of class relimplmboot or nulllevel
:Object of class
"numeric"
nboot
:Object of class
"numeric"
diffnam
:Object of class
"character"
rank
:Object of class
"logical"
diff
:Object of class
"logical"
rela
:Object of class
"logical"
fixed
:Object of class
"logical"
type
:Object of class
"character"
sort
:Object of class
"logical"
bty
:Object of class
"character"
mark
:Object of class
"matrix"
markdiff
:Object of class
"matrix"
var.y
:Object of class
"numeric"
R2
:Object of class
"numeric"
R2.decomp
:Object of class
"numeric"
lmg
:Object of class
"numeric"
pmvd
:Object of class
"numeric"
first
:Object of class
"numeric"
last
:Object of class
"numeric"
betasq
:Object of class
"numeric"
pratt
:Object of class
"numeric"
genizi
:Object of class
"numeric"
car
:Object of class
"numeric"
lmg.rank
:Object of class
"numeric"
pmvd.rank
:Object of class
"numeric"
first.rank
:Object of class
"numeric"
last.rank
:Object of class
"numeric"
betasq.rank
:Object of class
"numeric"
pratt.rank
:Object of class
"numeric"
genizi.rank
:Object of class
"numeric"
car.rank
:Object of class
"numeric"
lmg.diff
:Object of class
"numeric"
pmvd.diff
:Object of class
"numeric"
first.diff
:Object of class
"numeric"
last.diff
:Object of class
"numeric"
betasq.diff
:Object of class
"numeric"
pratt.diff
:Object of class
"numeric"
genizi.diff
:Object of class
"numeric"
car.diff
:Object of class
"numeric"
namen
:Object of class
"character"
nobs
:Object of class
"numeric"
: number of valid observations used in analysisalways
:Object of class
"numintnull"
: variables always in the modelalwaysnam
:Object of class
"charnull"
: variable names of variables always in model
Extends
Class "relimplm"
, directly.
Methods
This documentation section documents S4 methods only.
There are also S3-methods for printing, plotting, extracting slots with $
and producing
a brief summary. For their usage, see classesmethods.relaimpo
.
- show
S4-method: identical to
print
to the slot MIresult
for a briefer output than the standard printout
Author(s)
Ulrike Groemping, BHT Berlin
See Also
relimplm-class
, relimplmbooteval-class
,
booteval.relimp
, print.relimplmbootMI
,
plot.relimplmbootMI
, summary.relimplmbootMI
Class relimplmbooteval
Description
Output object from function booteval.relimp
, described there.
Objects from the Class
Objects should only be created by calls to function booteval.relimp
.
Slots
lmg.lower
:Object of class
"matrix"
~~lmg.upper
:Object of class
"matrix"
~~lmg.rank.lower
:Object of class
"matrix"
~~lmg.rank.upper
:Object of class
"matrix"
~~lmg.diff.lower
:Object of class
"matrix"
~~lmg.diff.upper
:Object of class
"matrix"
~~pmvd.lower
:Object of class
"matrix"
~~pmvd.upper
:Object of class
"matrix"
~~pmvd.rank.lower
:Object of class
"matrix"
~~pmvd.rank.upper
:Object of class
"matrix"
~~pmvd.diff.lower
:Object of class
"matrix"
~~pmvd.diff.upper
:Object of class
"matrix"
~~last.lower
:Object of class
"matrix"
~~last.upper
:Object of class
"matrix"
~~last.rank.lower
:Object of class
"matrix"
~~last.rank.upper
:Object of class
"matrix"
~~last.diff.lower
:Object of class
"matrix"
~~last.diff.upper
:Object of class
"matrix"
~~first.lower
:Object of class
"matrix"
~~first.upper
:Object of class
"matrix"
~~first.rank.lower
:Object of class
"matrix"
~~first.rank.upper
:Object of class
"matrix"
~~first.diff.lower
:Object of class
"matrix"
~~first.diff.upper
:Object of class
"matrix"
~~betasq.lower
:Object of class
"matrix"
~~betasq.upper
:Object of class
"matrix"
~~betasq.rank.lower
:Object of class
"matrix"
~~betasq.rank.upper
:Object of class
"matrix"
~~betasq.diff.lower
:Object of class
"matrix"
~~betasq.diff.upper
:Object of class
"matrix"
~~pratt.lower
:Object of class
"matrix"
~~pratt.upper
:Object of class
"matrix"
~~pratt.rank.lower
:Object of class
"matrix"
~~pratt.rank.upper
:Object of class
"matrix"
~~pratt.diff.lower
:Object of class
"matrix"
~~pratt.diff.upper
:Object of class
"matrix"
~~genizi.lower
:Object of class
"matrix"
~~genizi.upper
:Object of class
"matrix"
~~genizi.rank.lower
:Object of class
"matrix"
~~genizi.rank.upper
:Object of class
"matrix"
~~genizi.diff.lower
:Object of class
"matrix"
~~genizi.diff.upper
:Object of class
"matrix"
~~car.lower
:Object of class
"matrix"
~~car.upper
:Object of class
"matrix"
~~car.rank.lower
:Object of class
"matrix"
~~car.rank.upper
:Object of class
"matrix"
~~car.diff.lower
:Object of class
"matrix"
~~car.diff.upper
:Object of class
"matrix"
~~var.y.boot
:Object of class
"numeric"
~~R2.boot
:Object of class
"numeric"
~~R2.decomp.boot
:Object of class
"numeric"
~~lmg.boot
:Object of class
"matrix"
~~pmvd.boot
:Object of class
"matrix"
~~last.boot
:Object of class
"matrix"
~~first.boot
:Object of class
"matrix"
~~betasq.boot
:Object of class
"matrix"
~~pratt.boot
:Object of class
"matrix"
~~genizi.boot
:Object of class
"matrix"
~~car.boot
:Object of class
"matrix"
~~lmg.rank.boot
:Object of class
"matrix"
~~pmvd.rank.boot
:Object of class
"matrix"
~~last.rank.boot
:Object of class
"matrix"
~~first.rank.boot
:Object of class
"matrix"
~~betasq.rank.boot
:Object of class
"matrix"
~~pratt.rank.boot
:Object of class
"matrix"
~~genizi.rank.boot
:Object of class
"matrix"
~~car.rank.boot
:Object of class
"matrix"
~~lmg.diff.boot
:Object of class
"matrix"
~~pmvd.diff.boot
:Object of class
"matrix"
~~last.diff.boot
:Object of class
"matrix"
~~first.diff.boot
:Object of class
"matrix"
~~betasq.diff.boot
:Object of class
"matrix"
~~pratt.diff.boot
:Object of class
"matrix"
~~genizi.diff.boot
:Object of class
"matrix"
~~car.diff.boot
:Object of class
"matrix"
~~est
:Object of class
"numintnull"
~~vcov
:Object of class
"numintmatnull"
~~level
:Object of class
"numeric"
~~nboot
:Object of class
"numeric"
~~diffnam
:Object of class
"character"
~~rank
:Object of class
"logical"
~~diff
:Object of class
"logical"
~~rela
:Object of class
"logical"
~~fixed
:Object of class
"logical"
~~type
:Object of class
"character"
~~sort
:Object of class
"logical"
~~bty
:Object of class
"character"
~~mark
:Object of class
"matrix"
~~markdiff
:Object of class
"matrix"
~~var.y
:Object of class
"numeric"
~~R2
:Object of class
"numeric"
~~R2.decomp
:Object of class
"numeric"
~~lmg
:Object of class
"numeric"
~~pmvd
:Object of class
"numeric"
~~first
:Object of class
"numeric"
~~last
:Object of class
"numeric"
~~betasq
:Object of class
"numeric"
~~pratt
:Object of class
"numeric"
~~genizi
:Object of class
"numeric"
~~car
:Object of class
"numeric"
~~lmg.rank
:Object of class
"numeric"
~~pmvd.rank
:Object of class
"numeric"
~~first.rank
:Object of class
"numeric"
~~last.rank
:Object of class
"numeric"
~~betasq.rank
:Object of class
"numeric"
~~pratt.rank
:Object of class
"numeric"
~~genizi.rank
:Object of class
"numeric"
~~car.rank
:Object of class
"numeric"
~~lmg.diff
:Object of class
"numeric"
~~pmvd.diff
:Object of class
"numeric"
~~first.diff
:Object of class
"numeric"
~~last.diff
:Object of class
"numeric"
~~betasq.diff
:Object of class
"numeric"
~~pratt.diff
:Object of class
"numeric"
~~genizi.diff
:Object of class
"numeric"
~~car.diff
:Object of class
"numeric"
~~namen
:Object of class
"character"
~~nobs
:Object of class
"numeric"
~~ave.coeffs
:Object of class
"numintmatnull"
~~always
:Object of class
"numintnull"
~~alwaysnam
:Object of class
"charnull"
~~groupdocu
:Object of class
"list"
~~call
:Object of class
"langnull"
~~
Extends
Class "relimplm"
, directly.
Methods
This documentation section documents S4 methods only.
There are also S3-methods for printing, plotting and extracting slots with $
.
For their usage, see classesmethods.relaimpo
.
- show
S4 method: identical to
print
Author(s)
Ulrike Groemping, BHT Berlin
See Also
relimplm-class
, relimplmboot-class
, relimplmbootMI-class
,
booteval.relimp
, print.relimplmbooteval
,
plot.relimplmbooteval