Last updated on 2026-06-08 03:50:37 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 10.33 | 249.66 | 259.99 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 8.05 | 160.49 | 168.54 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 19.00 | 404.98 | 423.98 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 18.00 | 425.16 | 443.16 | NOTE | |
| r-devel-windows-x86_64 | 0.1.0 | 13.00 | 266.00 | 279.00 | NOTE | |
| r-patched-linux-x86_64 | 0.1.0 | 8.92 | 236.21 | 245.13 | NOTE | |
| r-release-linux-x86_64 | 0.1.0 | 9.68 | 232.98 | 242.66 | NOTE | |
| r-release-macos-arm64 | 0.1.0 | 3.00 | 70.00 | 73.00 | NOTE | |
| r-release-macos-x86_64 | 0.1.0 | 8.00 | 300.00 | 308.00 | NOTE | |
| r-release-windows-x86_64 | 0.1.0 | 14.00 | 261.00 | 275.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.1.0 | NOTE | ||||
| r-oldrel-macos-x86_64 | 0.1.0 | 6.00 | 224.00 | 230.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.1.0 | 17.00 | 353.00 | 370.00 | NOTE |
Version: 0.1.0
Check: Rd files
Result: NOTE
checkRd: (-1) trait_missing.Rd:17-18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trait_missing.Rd:19-20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trait_missing.Rd:21-22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trait_missing.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(traitstrap)
>
>
> test_check("traitstrap")
Saving _problems/test-trait_fit_distributions-27.R
Saving _problems/test-trait_parametric_bootstrapping-20.R
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 43 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-trait_fit_distributions.R:22:3'): returns parametric distribution tibbles of proper size ──
Error in `summarize(mutate(group_by(filled_traits, .data[[c(taxon_col)]], .data[[c(abundance_col)]], .data$n_sample, .add = TRUE), distribution_type = distribution_type[.data[[trait_col]]]), quiet(suppressWarnings(get_dist_parms(data = .data[[value_col]], distribution_type = .data$distribution_type[1]))), .groups = "keep")`: ℹ In argument: `quiet(...)`.
ℹ In group 220: `global = "global"`, `Site = "2"`, `PlotID = "D"`, `Trait =
"Plant_Height_cm"`, `Taxon = "dryas octopetala"`, `Cover = 20`, `n_sample =
3`.
Caused by error in `file()`:
! cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_true(...) at test-trait_fit_distributions.R:22:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─c("parametric_distributions", "tbl") %in% ...
5. ├─traitstrap::trait_fit_distributions(...)
6. │ ├─dplyr::summarize(...)
7. │ └─dplyr:::summarise.grouped_df(...)
8. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
9. │ ├─base::withCallingHandlers(...)
10. │ └─dplyr:::map(quosures, summarise_eval_one, mask = mask)
11. │ └─base::lapply(.x, .f, ...)
12. │ └─dplyr (local) FUN(X[[i]], ...)
13. │ └─mask$eval_all_summarise(quo)
14. │ └─dplyr (local) eval()
15. ├─traitstrap:::quiet(...)
16. │ └─base::sink(tempfile())
17. │ └─base::file(file, if (append) "a" else "w")
18. └─base::.handleSimpleError(...)
19. └─dplyr (local) h(simpleError(msg, call))
20. └─dplyr (local) handler(cnd)
21. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-trait_parametric_bootstrapping.R:18:3'): output is properly formatted ──
Error in `summarize(mutate(group_by(filled_traits, .data[[c(taxon_col)]], .data[[c(abundance_col)]], .data$n_sample, .add = TRUE), distribution_type = distribution_type[.data[[trait_col]]]), quiet(suppressWarnings(get_dist_parms(data = .data[[value_col]], distribution_type = .data$distribution_type[1]))), .groups = "keep")`: ℹ In argument: `quiet(...)`.
ℹ In group 22: `global = "global"`, `Site = "1"`, `PlotID = "A"`, `Trait =
"Wet_Mass_g"`, `Taxon = "luzula confusa"`, `Cover = 0.5`, `n_sample = 11`.
Caused by error in `file()`:
! cannot open the connection
Backtrace:
▆
1. ├─traitstrap::trait_fit_distributions(...) at test-trait_parametric_bootstrapping.R:18:3
2. │ ├─dplyr::summarize(...)
3. │ └─dplyr:::summarise.grouped_df(...)
4. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
5. │ ├─base::withCallingHandlers(...)
6. │ └─dplyr:::map(quosures, summarise_eval_one, mask = mask)
7. │ └─base::lapply(.x, .f, ...)
8. │ └─dplyr (local) FUN(X[[i]], ...)
9. │ └─mask$eval_all_summarise(quo)
10. │ └─dplyr (local) eval()
11. ├─traitstrap:::quiet(...)
12. │ └─base::sink(tempfile())
13. │ └─base::file(file, if (append) "a" else "w")
14. └─base::.handleSimpleError(...)
15. └─dplyr (local) h(simpleError(msg, call))
16. └─dplyr (local) handler(cnd)
17. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 43 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc