Last updated on 2026-06-06 20:53:22 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.1.0 | 24.14 | 306.90 | 331.04 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.1.0 | 16.55 | 148.39 | 164.94 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 3.1.0 | 42.00 | 466.54 | 508.54 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 3.1.0 | 45.00 | 511.78 | 556.78 | OK | |
| r-devel-windows-x86_64 | 3.1.0 | 26.00 | 320.00 | 346.00 | OK | |
| r-patched-linux-x86_64 | 3.1.0 | 26.73 | 292.75 | 319.48 | OK | |
| r-release-linux-x86_64 | 3.1.0 | 24.82 | 294.67 | 319.49 | OK | |
| r-release-macos-arm64 | 3.1.0 | 6.00 | 77.00 | 83.00 | OK | |
| r-release-macos-x86_64 | 3.1.0 | 18.00 | 316.00 | 334.00 | OK | |
| r-release-windows-x86_64 | 3.1.0 | 28.00 | 320.00 | 348.00 | OK | |
| r-oldrel-macos-arm64 | 3.1.0 | 6.00 | 76.00 | 82.00 | OK | |
| r-oldrel-macos-x86_64 | 3.1.0 | 18.00 | 277.00 | 295.00 | OK | |
| r-oldrel-windows-x86_64 | 3.1.0 | 38.00 | 455.00 | 493.00 | OK |
Version: 3.1.0
Check: examples
Result: ERROR
Running massageExamples to create ‘rbiom-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
cannot open file '/tmp/RtmpLALXJD/file3d268f1d0ae692/stats_boxplot.R': No space left on device
Execution halted
NONE
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.1.0
Check: tests
Result: ERROR
Running ‘testthat.r’ [24s/32s]
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
> library(testthat)
> library(rbiom)
>
> test_check("rbiom")
[ FAIL 1 | WARN 0 | SKIP 34 | PASS 181 ]
══ Skipped tests (34) ══════════════════════════════════════════════════════════
• On CRAN (34): 'test-bdiv_heatmap.r:5:3', 'test-bdiv_ord_plot.r:6:3',
'test-biom_merge.r:11:3', 'test-biom_ply.r:9:3', 'test-biom_ply.r:48:3',
'test-boxplot.r:10:3', 'test-boxplot_build.r:3:3', 'test-cache.r:3:3',
'test-convert.r:5:3', 'test-convert.r:27:3', 'test-convert.r:39:3',
'test-convert.r:57:3', 'test-convert.r:73:3', 'test-corrplot.r:11:3',
'test-distmat_ord_table.r:6:3', 'test-import_table.r:13:3',
'test-plot_heatmap.r:15:3', 'test-plot_palettes.r:6:3', 'test-rarefy.r:3:3',
'test-rbiom_objects.r:24:3', 'test-read_biom.r:3:3', 'test-read_fasta.r:3:3',
'test-read_tree.r:7:3', 'test-s3_methods.r:3:3', 'test-stats_emmeans.r:8:3',
'test-stats_wilcox.r:3:3', 'test-taxa_heatmap.r:5:3', 'test-taxa_map.r:3:3',
'test-taxa_stacked.r:5:3', 'test-taxa_table.r:3:3', 'test-utils.r:3:3',
'test-validate.r:3:3', 'test-write_biom.r:15:3', 'test-write_xlsx.r:3:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-rare_multiplot.r:3:3'): rare_multiplot ─────────────────────────
Error in `gzfile(file, mode)`: cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_silent(rare_multiplot(hmp5, stat.by = "Body Site")) at test-rare_multiplot.r:3:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─rbiom::rare_multiplot(hmp5, stat.by = "Body Site")
10. └─rbiom::rare_corrplot(...)
11. ├─base::with(...)
12. └─base::with.default(...)
13. └─base::eval(substitute(expr), data, enclos = parent.frame())
14. └─base::eval(substitute(expr), data, enclos = parent.frame())
15. ├─base::local(...)
16. │ └─base::eval.parent(substitute(eval(quote(expr), envir)))
17. │ └─base::eval(expr, p)
18. │ └─base::eval(expr, p)
19. └─base::eval(...)
20. └─base::eval(...)
21. └─plyr::ldply(...)
22. └─plyr::llply(...)
23. ├─base::structure(lapply(pieces, .fun, ...), dim = dim(pieces))
24. └─base::lapply(pieces, .fun, ...)
25. └─rbiom (local) FUN(X[[i]], ...)
26. └─rbiom::adiv_table(...)
27. └─rbiom:::set_cache_value(cache_file, tbl)
28. └─base::saveRDS(result, file = cache_file)
29. └─base::gzfile(file, mode)
[ FAIL 1 | WARN 0 | SKIP 34 | PASS 181 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc