Last updated on 2025-07-21 08:50:11 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 4.92 | 51.36 | 56.28 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 4.00 | 37.74 | 41.74 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 83.96 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 96.32 | ERROR | |||
| r-devel-windows-x86_64 | 1.1.0 | 6.00 | 67.00 | 73.00 | OK | |
| r-patched-linux-x86_64 | 1.1.0 | 5.41 | 46.29 | 51.70 | OK | |
| r-release-linux-x86_64 | 1.1.0 | 4.78 | 47.36 | 52.14 | OK | |
| r-release-macos-arm64 | 1.1.0 | 40.00 | OK | |||
| r-release-macos-x86_64 | 1.1.0 | 66.00 | OK | |||
| r-release-windows-x86_64 | 1.1.0 | 6.00 | 67.00 | 73.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.0 | 32.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.0 | 50.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.0 | 8.00 | 80.00 | 88.00 | OK |
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [8s/14s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library("testthat")
> test_check("pangaear")
Loading required package: pangaear
[ FAIL 6 | WARN 1 | SKIP 8 | PASS 31 ]
══ Skipped tests (8) ═══════════════════════════════════════════════════════════
• On CRAN (8): 'test-oai_functions.R:67:3', 'test-pg_data.R:7:3',
'test-pg_data.R:25:3', 'test-pg_data.R:32:3', 'test-pg_data.R:50:3',
'test-pg_data.R:78:3', 'test-pg_search.r:53:3', 'test-pg_search_es.R:29:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-oai_functions.R:5:5'): pg_identify() works ─────────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/data/gannet/ripley/R/packages/tests-devel/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:4:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_identify() at test-oai_functions.R:5:5
4. └─oai::id(url = baseoai(), ...)
5. ├─plyr::rbind.fill(lapply(url, id_, as = as, ...))
6. └─base::lapply(url, id_, as = as, ...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]])
9. │ ├─base::lapply(...)
10. │ └─xml2::xml_children(m)
11. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
12. ├─xml2::xml_children(xml2::read_xml(tt))
13. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
14. ├─xml2::read_xml(tt)
15. └─xml2:::read_xml.character(tt)
16. └─xml2:::path_to_connection(x)
17. └─xml2:::check_path(path)
18. └─cli::cli_abort(msg, call = call)
19. └─rlang::abort(...)
── Error ('test-oai_functions.R:14:5'): pg_list_sets() works ───────────────────
Error in `while_oai(url, args, token, as, ...)`: cannot parse downloaded XML, dumped raw XML to file ./oaidump_2025-07-21_07-06-57.6967271329a13f60dc3fxml
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:13:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_list_sets() at test-oai_functions.R:14:5
4. └─oai::list_sets(url = baseoai(), token = token, as = as, ...)
5. └─oai:::while_oai(url, args, token, as, ...)
── Error ('test-oai_functions.R:33:5'): pg_list_metadata_formats() works ───────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/data/gannet/ripley/R/packages/tests-devel/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:32:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_list_metadata_formats() at test-oai_functions.R:33:5
4. └─oai::list_metadataformats(url = baseoai(), ...)
5. └─oai:::one_mf(id, url, ...)
6. ├─xml2::read_xml(out)
7. └─xml2:::read_xml.character(out)
8. └─xml2:::path_to_connection(x)
9. └─xml2:::check_path(path)
10. └─cli::cli_abort(msg, call = call)
11. └─rlang::abort(...)
── Error ('test-oai_functions.R:55:5'): pg_get_record() works ──────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/data/gannet/ripley/R/packages/tests-devel/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:54:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_get_record(identifier = "oai:pangaea.de:doi:10.1594/PANGAEA.788382") at test-oai_functions.R:55:5
4. └─oai::get_records(...)
5. ├─stats::setNames(...)
6. └─base::lapply(...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─xml2::read_xml(tt)
9. └─xml2:::read_xml.character(tt)
10. └─xml2:::path_to_connection(x)
11. └─xml2:::check_path(path)
12. └─cli::cli_abort(msg, call = call)
13. └─rlang::abort(...)
── Error ('test-pg_identify.R:5:5'): pg_identify works ─────────────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/data/gannet/ripley/R/packages/tests-devel/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-pg_identify.R:4:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_identify() at test-pg_identify.R:5:5
4. └─oai::id(url = baseoai(), ...)
5. ├─plyr::rbind.fill(lapply(url, id_, as = as, ...))
6. └─base::lapply(url, id_, as = as, ...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]])
9. │ ├─base::lapply(...)
10. │ └─xml2::xml_children(m)
11. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
12. ├─xml2::xml_children(xml2::read_xml(tt))
13. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
14. ├─xml2::read_xml(tt)
15. └─xml2:::read_xml.character(tt)
16. └─xml2:::path_to_connection(x)
17. └─xml2:::check_path(path)
18. └─cli::cli_abort(msg, call = call)
19. └─rlang::abort(...)
── Failure ('test-pg_search.r:20:3'): pg_search works and stuff, and stuff and things, also, it works ──
aa$supplement_to inherits from `'logical'` not `'character'`.
[ FAIL 6 | WARN 1 | SKIP 8 | PASS 31 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc