Last updated on 2026-04-14 16:53:41 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.2 | 50.17 | 576.32 | 626.49 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.2 | 36.98 | 402.32 | 439.30 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 81.00 | 908.57 | 989.57 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 89.00 | 1004.82 | 1093.82 | OK | |
| r-devel-macos-arm64 | 0.1.2 | 14.00 | 146.00 | 160.00 | OK | |
| r-devel-windows-x86_64 | 0.1.2 | 46.00 | 471.00 | 517.00 | OK | |
| r-patched-linux-x86_64 | 0.1.2 | 0.35 | 2.11 | 2.46 | ERROR | |
| r-release-linux-x86_64 | 0.1.2 | 45.27 | 552.77 | 598.04 | OK | |
| r-release-macos-arm64 | 0.1.2 | 13.00 | 95.00 | 108.00 | ERROR | |
| r-release-macos-x86_64 | 0.1.2 | 35.00 | 282.00 | 317.00 | ERROR | |
| r-release-windows-x86_64 | 0.1.2 | 50.00 | 0.00 | 50.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.2 | 35.00 | 322.00 | 357.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.1.2 | 64.00 | 628.00 | 692.00 | OK |
Version: 0.1.2
Check: package dependencies
Result: ERROR
Package required but not available: ‘GenomicFeatures’
Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg38.knownGene’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-patched-linux-x86_64
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lisat)
> testthat::test_check("lisat")
Saving _problems/test-functions-71.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ────────
Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it.
Backtrace:
▆
1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-arm64
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘lisat-intro.Rmd’ using rmarkdown
Quitting from lisat-intro.Rmd:107-111 [cis_analysis]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.frame`:
! undefined columns selected
---
Backtrace:
▆
1. └─lisat::CIS(IS_raw = IS_raw, connect_distance = 50000)
2. ├─IS_raw[, c("Locus", "Chr", "nearest_gene_name")]
3. └─base::`[.data.frame`(IS_raw, , c("Locus", "Chr", "nearest_gene_name"))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'lisat-intro.Rmd' failed with diagnostics:
undefined columns selected
--- failed re-building ‘lisat-intro.Rmd’
SUMMARY: processing the following file failed:
‘lisat-intro.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lisat)
> testthat::test_check("lisat")
Saving _problems/test-functions-71.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ────────
Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it.
Backtrace:
▆
1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.1.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg38.knownGene’
Flavor: r-oldrel-macos-x86_64
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lisat)
> testthat::test_check("lisat")
Saving _problems/test-functions-71.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ────────
Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it.
Backtrace:
▆
1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64