Last updated on 2026-06-08 03:50:20 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.4 | 72.53 | 197.19 | 269.72 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.4 | 52.39 | 77.63 | 130.02 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.0.4 | 92.00 | 325.45 | 417.45 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.4 | 153.00 | 334.31 | 487.31 | OK | |
| r-devel-windows-x86_64 | 2.0.4 | 97.00 | 227.00 | 324.00 | OK | |
| r-patched-linux-x86_64 | 2.0.3 | 70.05 | 191.44 | 261.49 | OK | |
| r-release-linux-x86_64 | 2.0.4 | 67.16 | 191.52 | 258.68 | OK | |
| r-release-macos-arm64 | 2.0.4 | 16.00 | 62.00 | 78.00 | OK | |
| r-release-macos-x86_64 | 2.0.4 | 45.00 | 209.00 | 254.00 | OK | |
| r-release-windows-x86_64 | 2.0.4 | 95.00 | 237.00 | 332.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.4 | 13.00 | 64.00 | 77.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.4 | 44.00 | 193.00 | 237.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.4 | 112.00 | 309.00 | 421.00 | OK |
Version: 2.0.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Seurat.Rmd’ using rmarkdown
Quitting from Seurat.Rmd:19-25 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'Seurat'
---
Backtrace:
▆
1. └─base::library(Seurat)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Seurat.Rmd' failed with diagnostics:
there is no package called 'Seurat'
--- failed re-building ‘Seurat.Rmd’
--- re-building ‘detailedWalkthrough.Rmd’ using rmarkdown
Quitting from detailedWalkthrough.Rmd:26-106 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
▆
1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'detailedWalkthrough.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘detailedWalkthrough.Rmd’
--- re-building ‘quickstart.Rmd’ using rmarkdown
--- finished re-building ‘quickstart.Rmd’
SUMMARY: processing the following files failed:
‘Seurat.Rmd’ ‘detailedWalkthrough.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0.4
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(harmony)
Loading required package: Rcpp
• This is Harmony2 version 2.0.4
• Read the guide: run vignette()
• Get help: Visit the website at https://korsunskylab.github.io/harmony2/ and
report issues on https://github.com/immunogenomics/harmony/issues
>
> test_check("harmony")
181exists, retrying for cluster 41 2.68884
75exists, retrying for cluster 42 3.396
156exists, retrying for cluster 46 3.32219
22exists, retrying for cluster 48 3.474
288exists, retrying for cluster 2 1.08737
1478exists, retrying for cluster 17 3.28443
101exists, retrying for cluster 37 3.34212
Saving _problems/test_two_variable-11.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_two_variable.R:5:1'): (code run outside of `test_that()`) ──────
<std::logic_error/C++Error/error/condition>
Error: inv(): use of LAPACK must be enabled
Backtrace:
▆
1. ├─harmony::RunHarmony(...) at test_two_variable.R:5:1
2. └─harmony:::RunHarmony.default(...)
3. ├─base::tryCatch(...)
4. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─harmony:::harmonize(harmonyObj, max.iter.harmony, verbose)
6. └─harmonyObj$moe_correct_ridge_cpp()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang