Last updated on 2025-07-16 11:50:39 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.0 | 138.10 | 204.50 | 342.60 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.1.0 | 116.19 | 142.68 | 258.87 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.1.0 | 700.51 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.0 | 682.82 | OK | |||
| r-devel-windows-x86_64 | 2.1.0 | 181.00 | 738.00 | 919.00 | OK | |
| r-patched-linux-x86_64 | 2.0.0 | 166.19 | 189.45 | 355.64 | OK | |
| r-release-linux-x86_64 | 2.0.0 | 152.85 | 187.07 | 339.92 | OK | |
| r-release-macos-arm64 | 2.0.0 | 164.00 | OK | |||
| r-release-macos-x86_64 | 2.1.0 | 441.00 | OK | |||
| r-release-windows-x86_64 | 2.1.0 | 170.00 | 555.00 | 725.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.0 | 160.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.1.0 | 400.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.1.0 | 203.00 | 878.00 | 1081.00 | NOTE |
Version: 2.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘gdal-config-quick-ref.Rmd’ using rmarkdown
--- finished re-building ‘gdal-config-quick-ref.Rmd’
--- re-building ‘raster-api-tutorial.Rmd’ using rmarkdown
--- finished re-building ‘raster-api-tutorial.Rmd’
--- re-building ‘raster-attribute-tables.Rmd’ using rmarkdown
--- finished re-building ‘raster-attribute-tables.Rmd’
--- re-building ‘vector-api-overview.Rmd’ using rmarkdown
[gannet:203681:0:203681] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x5564641eab88)
==== backtrace (tid: 203681) ====
0 /lib64/libucs.so.0(ucs_handle_error+0x2e4) [0x7f66771b2df4]
1 /lib64/libucs.so.0(+0x17aed) [0x7f66771b4aed]
2 /lib64/libucs.so.0(+0x17cbd) [0x7f66771b4cbd]
3 /lib64/libc.so.6(+0x19c30) [0x7f668d12bc30]
4 /lib64/libc.so.6(+0x8da09) [0x7f668d19fa09]
5 /usr/local/clang20/lib/x86_64-unknown-linux-gnu/libc++.so.1(_ZNSt3__112basic_stringIcNS_11char_traitsIcEENS_9allocatorIcEEE6appendEPKcm+0x162) [0x7f668331cbe2]
6 /usr/local/clang/lib64/libgdal.so.36(+0xd67e14) [0x7f6679f67e14]
7 /usr/local/clang/lib64/libgdal.so.36(+0xd5da0c) [0x7f6679f5da0c]
8 /usr/local/clang/lib64/libgdal.so.36(_ZN8OGRLayer15WriteArrowBatchEPK11ArrowSchemaP10ArrowArrayPKPKc+0x91a) [0x7f6679f5ae1a]
9 /usr/local/clang/lib64/libgdal.so.36(+0xf227ae) [0x7f667a1227ae]
10 /usr/local/clang/lib64/libgdal.so.36(+0xf1e6db) [0x7f667a11e6db]
11 /usr/local/clang/lib64/libgdal.so.36(GDALVectorTranslate+0x27a1) [0x7f667a117471]
12 /data/gannet/ripley/R/packages/tests-clang/gdalraster.Rcheck/gdalraster/libs/gdalraster.so(_Z7ogr2ogrRKN4Rcpp6VectorILi16ENS_15PreserveStorageEEES4_RKNS_8NullableIS2_EES8_S8_+0x90a) [0x7f667ab3968a]
13 /data/gannet/ripley/R/packages/tests-clang/gdalraster.Rcheck/gdalraster/libs/gdalraster.so(_gdalraster_ogr2ogr+0xb5) [0x7f667aaeb995]
14 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8d5bb) [0x556420ba75bb]
15 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdc120) [0x556420bf6120]
16 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c]
17 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495]
18 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe1ad0) [0x556420bfbad0]
19 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0fbc) [0x556420bfafbc]
20 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x556420bde8e6]
21 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe84cc) [0x556420c024cc]
22 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc95b) [0x556420be695b]
23 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c]
24 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495]
25 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4f84) [0x556420bdef84]
26 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x556420bde55e]
27 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe89a7) [0x556420c029a7]
28 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b818) [0x556420c45818]
29 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xccbdf) [0x556420be6bdf]
30 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c]
31 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495]
32 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4f84) [0x556420bdef84]
33 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x556420bde55e]
34 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4f84) [0x556420bdef84]
35 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde250) [0x556420bf8250]
36 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc99a2) [0x556420be39a2]
37 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c]
38 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495]
39 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe1ad0) [0x556420bfbad0]
40 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0fbc) [0x556420bfafbc]
41 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x556420bde8e6]
42 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe84cc) [0x556420c024cc]
43 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc95b) [0x556420be695b]
44 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c]
45 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495]
46 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe1ad0) [0x556420bfbad0]
47 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0fbc) [0x556420bfafbc]
48 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x556420bde8e6]
49 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe1ad0) [0x556420bfbad0]
50 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0fbc) [0x556420bfafbc]
51 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc153) [0x556420be6153]
52 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c]
53 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495]
54 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe1ad0) [0x556420bfbad0]
55 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0fbc) [0x556420bfafbc]
56 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x556420bde8e6]
57 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x116a4c) [0x556420c30a4c]
58 /data/gannet/ripley/R/R-clang/bin/exec/R(run_Rmainloop+0xbf) [0x556420c3254f]
59 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x1185bb) [0x556420c325bb]
60 /data/gannet/ripley/R/R-clang/bin/exec/R(main+0x18) [0x556420b1bda8]
61 /lib64/libc.so.6(+0x35f5) [0x7f668d1155f5]
=================================
*** caught segfault ***
address 0x4d200031ba1, cause 'unknown'
Traceback:
1: ogr2ogr(zf_gpkg, mem_gpkg)
2: eval(expr, envir)
3: eval(expr, envir)
4: withVisible(eval(expr, envir))
5: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
6: eval(call)
7: eval(call)
8: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
9: doWithOneRestart(return(expr), restart)
10: withOneRestart(expr, restarts[[1L]])
11: withRestartList(expr, restarts[-nr])
12: doWithOneRestart(return(expr), restart)
13: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
14: withRestartList(expr, restarts)
15: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
16: evaluate::evaluate(...)
17: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
18: in_dir(input_dir(), expr)
19: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
20: eng_r(options)
21: block_exec(params)
22: call_block(x)
23: process_group(group)
24: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
25: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
26: process_file(text, output)
27: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
28: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
29: vweave_rmarkdown(...)
30: engine$weave(file, quiet = quiet, encoding = enc)
31: doTryCatch(return(expr), name, parentenv, handler)
32: tryCatchOne(expr, names, parentenv, handlers[[1L]])
33: tryCatchList(expr, classes, parentenv, handlers)
34: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
35: tools:::.buildOneVignette("vector-api-overview.Rmd", "/data/gannet/ripley/R/packages/tests-clang/gdalraster.Rcheck/vign_test/gdalraster", TRUE, FALSE, "vector-api-overview", "UTF-8", "/tmp/RtmpnYmlvs/working_dir/RtmpeV79Jm/file2ff893ff61021.rds")
An irrecoverable exception occurred. R is aborting now ...
SUMMARY: processing the following file failed:
‘vector-api-overview.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.0.0
Check: installed package size
Result: NOTE
installed size is 76.1Mb
sub-directories of 1Mb or more:
doc 1.4Mb
extdata 2.0Mb
libs 71.8Mb
Flavor: r-oldrel-macos-arm64
Version: 2.1.0
Check: installed package size
Result: NOTE
installed size is 80.4Mb
sub-directories of 1Mb or more:
doc 1.4Mb
extdata 2.0Mb
libs 76.1Mb
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-x86_64