Last updated on 2026-03-16 02:53:14 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 67.96 | 99.52 | 167.48 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.0 | 52.05 | 55.84 | 107.89 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.0 | 110.00 | 156.84 | 266.84 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.0 | 148.00 | 163.68 | 311.68 | OK | |
| r-devel-macos-arm64 | 0.2.0 | 13.00 | 22.00 | 35.00 | OK | |
| r-devel-windows-x86_64 | 0.2.0 | 93.00 | 141.00 | 234.00 | OK | |
| r-patched-linux-x86_64 | 0.2.0 | 65.26 | 92.28 | 157.54 | OK | |
| r-release-linux-x86_64 | 0.2.0 | 63.38 | 90.84 | 154.22 | OK | |
| r-release-macos-arm64 | 0.2.0 | OK | ||||
| r-release-macos-x86_64 | 0.2.0 | 40.00 | 153.00 | 193.00 | OK | |
| r-release-windows-x86_64 | 0.2.0 | 85.00 | 134.00 | 219.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.2.0 | 39.00 | 143.00 | 182.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.0 | 81.00 | 161.00 | 242.00 | OK |
Version: 0.2.0
Check: examples
Result: ERROR
Running examples in ‘filearray-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: filearray_bind
> ### Title: Merge and bind homogeneous file arrays
> ### Aliases: filearray_bind
>
> ### ** Examples
>
> partition_size <- 1
> type <- "double"
> x1 <- filearray_create(
+ tempfile(), c(2,2), type = type,
+ partition_size = partition_size)
> x1[] <- 1:4
> x2 <- filearray_create(
+ tempfile(), c(2,1), type = type,
+ partition_size = partition_size)
> x2[] <- 5:6
>
> y1 <- filearray_bind(x1, x2, symlink = FALSE)
> y2 <- filearray_bind(x1, x2)
>
> # y1 copies partition files, and y2 simply creates links
> # if symlink is supported
>
> y1[] - y2[]
Error in fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, :
argument "tmp" is missing, with no default
Calls: [ -> [.FileArray -> fa_subset1
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [17s/22s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(filearray)
R CMD check mode. Using 2 threads.
>
> # Sys.setenv("FILEARRAY_SKIP_COLLAPSE" = "TRUE")
>
> cat(utils::capture.output({
+ print(Sys.getenv())
+ }), sep = "\n", file = stderr())
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>
> test_check("filearray")
Saving _problems/test-as_filearray-13.R
Saving _problems/test-as_filearray-50.R
Saving _problems/test-bind-53.R
Saving _problems/test-bind-119.R
Saving _problems/test-cpp-81.R
Saving _problems/test-cpp-167.R
Saving _problems/test-cpp-269.R
Saving _problems/test-cpp-367.R
Saving _problems/test-dimnames-8.R
Saving _problems/test-map-30.R
Saving _problems/test-map-129.R
Saving _problems/test-map-153.R
Saving _problems/test-method_add-24.R
Saving _problems/test-method_sub-24.R
Saving _problems/test-method_subset-27.R
Saving _problems/test-method_subsetAssign-22.R
Saving _problems/test-methods_simple-8.R
[ FAIL 17 | WARN 0 | SKIP 3 | PASS 218 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-collapse.R:85:5', 'test-collapse.R:196:5',
'test-collapse.R:308:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-as_filearray.R:13:5'): as_filearray ────────────────────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_equal(y[], x, tolerance = 1e-05, ignore_attr = TRUE) at test-as_filearray.R:13:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─y[]
5. └─filearray:::`[.FileArray`(y, )
6. └─filearray:::fa_subset1(...)
── Error ('test-as_filearray.R:50:5'): as_filearrayproxy ───────────────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_equal(y[], x, tolerance = 1e-05) at test-as_filearray.R:50:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─y[]
5. └─filearray:::`[.FileArray`(y, )
6. └─filearray:::fa_subset1(...)
── Error ('test-bind.R:53:5'): bind (FileArray) ────────────────────────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_identical(w[], l[]) at test-bind.R:53:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─w[]
5. └─filearray:::`[.FileArray`(w, )
6. └─filearray:::fa_subset1(...)
── Error ('test-bind.R:119:5'): bind (FileArrayProxy) ──────────────────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_identical(w[], l[]) at test-bind.R:119:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─w[]
5. └─filearray:::`[.FileArray`(w, )
6. └─filearray:::fa_subset1(...)
── Error ('test-cpp.R:81:5'): C++: IO - subset/assign ──────────────────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_equal(x[], y) at test-cpp.R:81:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─x[]
5. └─filearray:::`[.FileArray`(x, )
6. └─filearray:::fa_subset1(...)
── Error ('test-cpp.R:167:5'): C++: IO - subset/assign - complex ───────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_lt(max(Mod(x[] - y)), 1e-06) at test-cpp.R:167:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─x[]
5. └─filearray:::`[.FileArray`(x, )
6. └─filearray:::fa_subset1(...)
── Error ('test-cpp.R:269:5'): C++: IO - subset/assign - float ─────────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_equal(x[], y, tolerance = eps) at test-cpp.R:269:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─x[]
5. └─filearray:::`[.FileArray`(x, )
6. └─filearray:::fa_subset1(...)
── Error ('test-cpp.R:367:5'): C++: IO - type conversion ───────────────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_equal(x[], y) at test-cpp.R:367:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─x[]
5. └─filearray:::`[.FileArray`(x, )
6. └─filearray:::fa_subset1(...)
── Error ('test-dimnames.R:8:5'): Subset with dimnames ─────────────────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_identical(dimnames(x[]), dimnames(y)) at test-dimnames.R:8:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─x[]
5. └─filearray:::`[.FileArray`(x, )
6. └─filearray:::fa_subset1(...)
── Error ('test-map.R:30:5'): map with proxy ───────────────────────────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_equal(re, colSums(matrix(x4[], ncol = bc))) at test-map.R:30:5
2. │ └─testthat::quasi_label(enquo(expected), expected.label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::colSums(matrix(x4[], ncol = bc))
5. │ └─base::is.data.frame(x)
6. ├─base::matrix(x4[], ncol = bc)
7. ├─x4[]
8. └─filearray:::`[.FileArray`(x4, )
9. └─filearray:::fa_subset1(...)
── Error ('test-map.R:129:5'): map filearrays ──────────────────────────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_equal(output[], b) at test-map.R:129:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─output[]
5. └─filearray:::`[.FileArray`(output, )
6. └─filearray:::fa_subset1(...)
── Error ('test-map.R:153:5'): fwhich ──────────────────────────────────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─x[] at test-map.R:153:5
2. └─filearray:::`[.FileArray`(x, ) at test-map.R:153:5
3. └─filearray:::fa_subset1(...)
── Error ('test-method_add.R:24:5'): method: addition ──────────────────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_equal(arr_dbl[dimnames = NULL], x_dbl, tolerance = 1e-05) at test-method_add.R:24:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─arr_dbl[dimnames = NULL]
5. └─filearray:::`[.FileArray`(arr_dbl, dimnames = NULL)
6. └─filearray:::fa_subset1(...)
── Error ('test-method_sub.R:24:5'): method: addition ──────────────────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_equal(arr_dbl[dimnames = NULL], x_dbl, tolerance = 1e-05) at test-method_sub.R:24:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─arr_dbl[dimnames = NULL]
5. └─filearray:::`[.FileArray`(arr_dbl, dimnames = NULL)
6. └─filearray:::fa_subset1(...)
── Error ('test-method_subset.R:27:5'): subset filearray-proxy ─────────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_equal(x[i], x[][i]) at test-method_subset.R:27:5
2. │ └─testthat::quasi_label(enquo(expected), expected.label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─x[]
5. └─filearray:::`[.FileArray`(x, )
6. └─filearray:::fa_subset1(...)
── Error ('test-method_subsetAssign.R:22:5'): subset-assign filearray-proxy ────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_equal(z[], 2 * y[]) at test-method_subsetAssign.R:22:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─z[]
5. └─filearray:::`[.FileArray`(z, )
6. └─filearray:::fa_subset1(...)
── Error ('test-methods_simple.R:8:5'): Simple operators ───────────────────────
<getvarError/missingArgError/error/condition>
Error in `fa_subset1(x, , ..., drop = drop, reshape = reshape, strict = strict, dimnames = dimnames, split_dim = split_dim)`: argument "tmp" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_equal(y[], !is.na(x[])) at test-methods_simple.R:8:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─y[]
5. └─filearray:::`[.FileArray`(y, )
6. └─filearray:::fa_subset1(...)
[ FAIL 17 | WARN 0 | SKIP 3 | PASS 218 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc