8f31afaf3752fe8627b9d65619682b97 *DESCRIPTION
5eaa0d90e5a6d4dd6d2d0bdc983813a1 *NAMESPACE
df7376743d71e0f1944cd9968e070070 *R/RcppExports.R
477f8067f6c32c51073d57b6cee81523 *R/calc_act.R
321477fd9a3f7f9e715cbf51dd2578ab *R/calc_ess.R
0cf502d7593471803768cca004f0f21a *R/calc_esses.R
c184e81927d729a5269535ef548212cb *R/calc_geom_mean.R
7019f847cca1ee2f7458784851cd9292 *R/calc_hpd_interval.R
cb135e3d5bf2a71ebdf888fde58c7bc3 *R/calc_mode.R
672ec6337dd849c6410662182c79b90f *R/calc_stderr_mean.R
49cdf67a6667562c0cb7fe4956a3ee49 *R/calc_summary_stats.R
82c2a7f5c3aecd177c5fc92252f9f4d0 *R/check_trace.R
f1614e4bb9f519b9eadb2b3844eb6f52 *R/count_trees_in_file.R
37054a13ae8878ff8c1aa63d0ad9553c *R/cs_std_dev.R
dc4a03a44957d57f34638f64688dd3c5 *R/default_params_doc.R
d68a2e288f7db5bc0bce62a7d4a41175 *R/extract_operators_lines.R
a3aa4a272b8bc16f48dadc609723bde3 *R/get_path.R
c3ca8934f76ef4d82a451bb34883831d *R/get_paths.R
489b013e5e864b3a30143af8d7f67e8a *R/get_tracerer_tempfilename.R
b7a35bf7e5e2b9a82eb04f423bad37cb *R/is_posterior.R
91e0dcd4d2cf89924da65a3f82ac6fd6 *R/is_trees_file.R
16b89f986df294884c407231fb5fc9ca *R/is_trees_posterior.R
46fb67d20725ab89d008213ba90a6bd0 *R/parse_beast_log.R
f690d7e088df3a29f76c876ca550761b *R/parse_beast_output_files.R
cc996726d6b99b99dcdc2c8aeae27332 *R/parse_beast_posterior.R
d3c44ea682b772bad4531662c1962d3b *R/parse_beast_state.R
b54d773da7869cdf6772f0497867cf7d *R/parse_beast_tracelog_file.R
6ea3c1a96babfd80c8d54c22f3287ee3 *R/parse_beast_trees.R
2226f0d752b2e06b48c7db64a05f37d1 *R/remove_burn_in.R
7c2aeee327023d38ba52ee85a817be8a *R/remove_burn_ins.R
ef18f433b5962f841f2e1e44f35f505f *R/save_beast_estimates.R
fe1c4946d668524be52c42b8d50a22ac *R/save_beast_trees.R
7d34f1b5a94fd7479fee9b73058c3d8e *R/tracerer-package.R
d8c317780d2d14bf4311a859dbfdb562 *build/vignette.rds
6cfc6b57a37c03cc28f023d0e7ba580d *inst/CITATION
48ce6093de6cde188aba83b5a726018c *inst/WORDLIST
8b766acb4e9aba6c717a69823085f18c *inst/doc/demo.R
0a2cf552c8b62c42d1a192aa3f8f196b *inst/doc/demo.Rmd
f93a5218a44b5cbd1f9bbdedc673f656 *inst/doc/demo.html
3b024a9ad9e6e28be76783920a2c2688 *inst/extdata/anthus_2_4.log
ed473df6c85bcede8fa60a1f8230b30c *inst/extdata/anthus_2_4.state
107b03e0c328c1d2735b8f35d0fe0b01 *inst/extdata/anthus_2_4.xml
ec9d4622f382e3e582f02e19f6c0186f *inst/extdata/anthus_2_4_a.trees
045f10431fb1a789198c59fb5e4efbdc *inst/extdata/anthus_2_4_b.trees
0eedfd95a1fff834d513246b4e4624e2 *inst/extdata/anthus_aco.fas
93d45a2f0c0145ebfebdedeb073025f1 *inst/extdata/anthus_nd2.fas
b8231c2de96de5d0c4ab0082a38c41d5 *inst/extdata/beast2_example_output.log
f83191933040361f729577af64c44110 *inst/extdata/beast2_example_output.trees
346226afa164793704af01106aa3b2d8 *inst/extdata/beast2_example_output.xml
5ac7281e62e96d3c330bb6072aa6096d *inst/extdata/beast2_example_output.xml.state
7905c7b1fc3c7f12f2c9502608fa7c92 *inst/extdata/mcbette_issue_8.trees
e998f1ca74b38af5aff9d901fd8251e7 *inst/extdata/missing_end.trees
9344047dcd5ba98ddbb9b12504eef235 *inst/extdata/unplottable_anthus_aco.trees
e095a543398b8b688b8faa6168881ffa *man/calc_act.Rd
22f7488c5ff974a00d7e840c1e136469 *man/calc_act_cpp.Rd
8099210c79a763c69281706d2d5dee4f *man/calc_act_r.Rd
8e93983d7400edbf7253e328088b6def *man/calc_ess.Rd
07d4f7e09f6035bcf5a81d702ac4dcea *man/calc_esses.Rd
79f2ffd2cf5c626e8dcd1039238e7abb *man/calc_geom_mean.Rd
8d806eae35f026189464a2a2ce3ff7ec *man/calc_hpd_interval.Rd
78e99430a06ecbe6188e604a3d89d4b6 *man/calc_mode.Rd
632ac9ff4f736492d17b4109dfe830fa *man/calc_std_error_of_mean_cpp.Rd
75859d1b5964eb6947712864c2c8b41d *man/calc_stderr_mean.Rd
e5386ce3be270c72a935d0429593a7b9 *man/calc_summary_stats.Rd
fe9efa61e0aa2d26f5611bad6e7d7c0a *man/calc_summary_stats_trace.Rd
867beb2c028addc24e9781412f4b2205 *man/calc_summary_stats_traces.Rd
c88506e20c04ecabf31e642fe85356e3 *man/check_trace.Rd
7f7c237d9ac8c66b6d90f27cefed76be *man/count_trees_in_file.Rd
776b2122eb3f8272f5ffe0b679c3b612 *man/cs_std_dev.Rd
fe24787e86992a7ab9fb8502f50d3472 *man/default_params_doc.Rd
6755b0ed3bbf085c2baaf726dfcfe4c6 *man/extract_operators_lines.Rd
f7de71e5ff24145a37bf281e4d155cfa *man/figures/AppVeyor.png
3f25ab37a1f6270f76c025cf6eda5421 *man/figures/Codecov.png
b55c56f3943a394162527954ca4a3009 *man/figures/GitHubActions.png
4f9bce317a2b82518737a7ee7381c2ec *man/figures/TravisCI.png
c07f98fce64224bc36d52026e8ef40f8 *man/figures/tracerer_logo.png
ff66afa862f0b4e96d92a3e01e18e62b *man/get_tracerer_path.Rd
fad3e209c03c9780f25a10b7d5f362cd *man/get_tracerer_paths.Rd
87fbe6fdb17e246dd580dccbf13189b4 *man/get_tracerer_tempfilename.Rd
55320333606efc6c3d71d2b85b9b140c *man/is_posterior.Rd
f3d536fbd0f04e3386be776eec6f1f32 *man/is_trees_file.Rd
75b251006451548e84724ba3ad767711 *man/is_trees_posterior.Rd
7e6e5721317a3dd20d9f7e4c22977440 *man/parse_beast_log.Rd
d5c829febc0ab5055784bdc0605c6680 *man/parse_beast_output_files.Rd
8b3144362f5ca8673bfc5d0d6752b003 *man/parse_beast_posterior.Rd
3e8c63376c9f86d95861121ab8faff8e *man/parse_beast_state_operators.Rd
21949c58805f5dc0343e0ab88e609d98 *man/parse_beast_tracelog_file.Rd
788ac46f5658cb9a3323f4663320d301 *man/parse_beast_trees.Rd
0764d17ca25c5f562c9fee4fb21c4c95 *man/remove_burn_in.Rd
aa6f6b04ca4514a35dd4068518414da0 *man/remove_burn_ins.Rd
caa92bc5712eb681af5f431fb2550974 *man/save_beast_estimates.Rd
b4dafec6bf49924e59480458cb5a267a *man/save_beast_trees.Rd
780d0bc898fd7abb2181fee7322b1f11 *man/tracerer-package.Rd
2ff163e12cb5e171c9d07bb74d38868d *src/RcppExports.cpp
0f4e9e12f4996648bd0af0156d4d1a83 *src/calc_act_cpp.cpp
35d34fbde8e5a56972c72df707484233 *src/calc_act_cpp.h
ad741e0ae5c31e93b0994f2abe45116d *src/calc_std_error_of_mean_cpp.cpp
5bf25b7bf60f13aa1772467ce8ade52f *src/calc_std_error_of_mean_cpp.h
0a2cf552c8b62c42d1a192aa3f8f196b *vignettes/demo.Rmd
8f440d5ac99cd59bf0358d79149231a5 *vignettes/densitree_example_output.png
413ee70600b6e3bd87cc7c0b2bddc005 *vignettes/tracer_distr_posterior.png
bdcdd370c9ea76c571ad8138e1937687 *vignettes/tracer_example_output.png
8d16e3a317b24da4b09c4c7cb40482fa *vignettes/tracer_trace_posterior.png
c07f98fce64224bc36d52026e8ef40f8 *vignettes/tracerer_logo.png
