Package: microeco
Type: Package
Title: Microbial Community Ecology Data Analysis
Version: 2.4.0
Authors@R: c(person("Chi", "Liu", role = c("aut", "cre"), email = "liuchi0426@126.com"),
              person("Felipe", "R. P. Mansoldo", role = "ctb", email = "mansoldo@micro.ufrj.br"),
              person("Minjie", "Yao", role = "ctb", email = "yaomj@fafu.edu.cn"),
              person("Xiangzhen", "Li", role = "ctb", email = "lixz@fafu.edu.cn")
			  )
Author: Chi Liu [aut, cre],
  Felipe R. P. Mansoldo [ctb],
  Minjie Yao [ctb],
  Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Description: A series of data analysis approaches for microbiome data based on the R6 class. The classes are designed for data preprocessing, niche analysis, taxonomic abundance plot, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis, functional redundancy analysis, metabolites analysis, etc.
URL: https://github.com/ChiLiubio/microeco
Depends: R (>= 3.5.0), ggplot2 (>= 3.5.0)
Imports: R6, stats, ape, vegan, rlang, data.table, magrittr, dplyr,
        tibble, scales, grid, RColorBrewer, reshape2, igraph (>=
        2.0.0), lifecycle, withr
Suggests: GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel,
        agricolae, gridExtra, picante, pheatmap, mice, GGally
License: GPL-3
LazyData: true
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2026-09-24 01:52:34 UTC; Chi
Repository: CRAN
Date/Publication: 2026-09-24 08:00:02 UTC
RoxygenNote: 7.3.3
