9a93acdebed31a3e183379ca14e84ca7 *DESCRIPTION
bc13263f178de2543ca28f6e33f77779 *LICENSE
fcef5628328f80eb54a98f278b876bca *NAMESPACE
579e32c4f26883dae7357c3a3255904c *R/backend_helpers.R
1fc5172248d21215ec7d91a601bff454 *R/data.R
f97bc6a733b2e04dffe043beed0c8017 *R/dcst_landmark_pipeline.R
85757abf9c4daf153d0de78c3dd36658 *R/filter_asv.R
33cbb42e4cc8292b6e2a8eb7a1c4ccd5 *R/hypercube_embedding.R
cc9cc141f4627ba6fa21acc2526831df *R/imports.R
41e6dfcc3bb341d1f1a2c2c62b6d26b9 *R/label_format.R
cee88be7e896c51337027fec20bd9763 *R/landmarks.R
f0e00ddbf33355769a7851b7bdbb0874 *R/linf.R
19df704abaac7cb59fbd6b11a514b643 *R/transfer_dcsts.R
5a00d66f7f0e72c09b56b0b959fe7dfd *README.md
76e123f5dcc8dee07678412adc0a2a84 *build/partial.rdb
983e0db8741b53154217a77ed431f291 *build/vignette.rds
0381d35318e5cd2717900780d7d3fa8b *data/agp_gut.rda
1fc791ee84468682823b858c93d2d2c5 *data/valencia13k_dcst_depth2_merged.rda
6109c7078ecc46bcd5ada97122c54fed *data/valencia13k_dcst_depth3_merged.rda
36e0b98930465964342bfb62400d0b72 *data/valencia2k.rda
ac48dac215569ba9e0f6fbdd705ea7ff *data/valencia_linf_hypercube_1k.rda
218fbf4baa3571e547ab16dfe00623c8 *inst/CITATION
56dcad23d84472d572521fe2164938a6 *inst/DATA_PROVENANCE.md
3fea644ca88837f797e7aa8bf5b33bf1 *inst/WORDLIST
6d01ae5dbc9447627a1814cd9bda3a01 *inst/doc/linf-intro.R
9c0a712be60bcf041dbf7926ef347355 *inst/doc/linf-intro.Rmd
11073006f493ffd5627c92c5a2655985 *inst/doc/linf-intro.html
0e99802f9dd5f7c2f49d73d904abbcb7 *inst/doc/linf-vaginal.R
125c00377239a395dedbf98506886388 *inst/doc/linf-vaginal.Rmd
e592b5acd85d2b30fae30632bfb3f576 *inst/doc/linf-vaginal.html
891673b40894447bc31f3ef853d4c7a1 *inst/extdata/agp_gut_counts.csv.gz
46bf11b0b95ad39586b8d97506a1b458 *inst/extdata/agp_gut_meta.csv
456ee6a93f96893993f38776ac41f62d *inst/extdata/agp_gut_taxa.txt
2c031e80ff8d565f54d43b77e7b948a0 *man/agp_gut.Rd
a9c1564e5f2eb668cbdb4b2e2011e881 *man/asv.to.linf.csts.Rd
d5828722711ebc33815067e5e038f493 *man/collapse.rare.Rd
635cdcf98eee1f06ca2fcf0a5949fdba *man/expand.rare.Rd
3c1218a4357e69e06d326e24205ac029 *man/figures/readme-dcst-barplot.png
b2200fd5ec01fdcb1b356b227b43d226 *man/filter.asv.Rd
1d03e09e1e6fe4c9249c148f3ed5d590 *man/latex.linf.csts.Rd
d971c14d4d73af6441107d69fb6cc59a *man/linf.cells.Rd
bab2f96ec9b94c278507cd061e0ce2f7 *man/linf.csts.Rd
44ee8a55b7e44262a048e207b6ad0b1f *man/linf.dcst.landmark.pipeline.Rd
ebbdb5793689e2a61d171ef5b2343aa3 *man/linf.feature.labels.Rd
2f3e7f0e703c34cae8d2afb1c3399e8e *man/linf.hypercube.embedding.Rd
10a0566f1dcb841c1d89a822d06c7d32 *man/linf.landmarks.Rd
f2d58c00eee8f3143f9e9849d230e219 *man/normalize.linf.Rd
25d2373557704c9b8ba8648ecc221d73 *man/print.linf.csts.Rd
bdb173632ce828f5649a331bc37c73f7 *man/refine.linf.csts.Rd
e33a759b914cfc1f42e1242fc9e810c6 *man/refine.linf.csts.iter.Rd
af8ea8ff8e15f3c2aaa14c2e50e10a66 *man/summary.linf.csts.Rd
d0ac5adbd4155e07ef9a0b5e43cf1806 *man/transfer.dcsts.Rd
cf6d4c759f2d6051ffcf80fc67265ab5 *man/valencia13k_dcst_depth2_merged.Rd
29acb64f3539963f9cdc66705cec6ef5 *man/valencia13k_dcst_depth3_merged.Rd
d0f9983528900cc41e40ff515e29815b *man/valencia2k.Rd
70cfcfb6a712a82aae4c4623722a5cc1 *man/valencia_linf_hypercube_1k.Rd
04a7502dbd35c73d550f280fc6cf4f3f *tests/testthat.R
0d18a038e65a1bf70274da647209c2d1 *tests/testthat/test-data-provenance.R
0e1179d8c9c74e35d6dc1a699efcfc1b *tests/testthat/test-dcst-landmark-pipeline.R
654c2d2b3e32e26b99e9b7042fa0aa75 *tests/testthat/test-filter.asv.R
546d30ec33bd0786391a9b9bc187c684 *tests/testthat/test-hypercube-embedding.R
fbe278fc7553f01be1c1470a7f8fda8a *tests/testthat/test-label-formatting.R
bc2ac29625d793271330027d6273a9dd *tests/testthat/test-landmarks.R
ebb535f20674fe6d6a145e87c1af6cb5 *tests/testthat/test-sparse-backend.R
559a0c7969ff335875fc34a97f65dab6 *tests/testthat/test-transfer-dcsts.R
9c0a712be60bcf041dbf7926ef347355 *vignettes/linf-intro.Rmd
125c00377239a395dedbf98506886388 *vignettes/linf-vaginal.Rmd
